PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_016852 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | NAC | ||||||||
Protein Properties | Length: 265aa MW: 29485.9 Da PI: 4.782 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 101.8 | 9.6e-32 | 2 | 72 | 57 | 128 |
NAM 57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ewyf+s++d+ky++g+r+nrat++gyWkatgkd++v s ++ vg+kktLv+ykgrap+g +t+Wvmheyrl DCAR_016852 2 EWYFYSPKDRKYPNGSRTNRATRAGYWKATGKDRSVQS-HKVPVGMKKTLVYYKGRAPHGIRTNWVMHEYRL 72 8************************************9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 39.131 | 1 | 99 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.4E-37 | 2 | 99 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.5E-15 | 3 | 72 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MEWYFYSPKD RKYPNGSRTN RATRAGYWKA TGKDRSVQSH KVPVGMKKTL VYYKGRAPHG 60 IRTNWVMHEY RLTQSLYGES SSNAPSLKDS YALCRVFKKA LHMPKSAKDD QMSIEITAGV 120 SETGDDQMNE QDDSKLQPSD ASSSDLTEGT PVEPAIVTDC VQPPSFSETE ANSTAINYCP 180 STPKFYQGPQ ISNYMSMQYE ETCYTPLALE DFPQIDISGE PKSSIKAPGD EALDDPFMYV 240 YASGTMMLEE IMSLCSAQDN SIVN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-33 | 2 | 99 | 75 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-33 | 2 | 99 | 75 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-33 | 2 | 99 | 75 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-33 | 2 | 99 | 75 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-33 | 2 | 99 | 75 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-33 | 2 | 99 | 75 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-33 | 2 | 99 | 75 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-33 | 2 | 99 | 75 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017251669.1 | 0.0 | PREDICTED: NAC domain-containing protein 45-like | ||||
TrEMBL | A0A164XUS0 | 0.0 | A0A164XUS0_DAUCS; Uncharacterized protein | ||||
STRING | cassava4.1_024467m | 4e-80 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54330.1 | 1e-50 | NAC domain containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_016852 |