PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_016661 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | NAC | ||||||||
Protein Properties | Length: 267aa MW: 30261.3 Da PI: 8.7756 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.3 | 2.5e-52 | 9 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtd+elv++yL++k++++++++ +ike+d+yk++PwdLp + ++kewyfFs+r++ky++g+r+nra+ sgyWkatg dk++ s + DCAR_016661 9 LPPGFRFHPTDDELVMHYLCRKCASQQIDV-PIIKELDLYKHDPWDLPGLALYGDKEWYFFSPRERKYPNGSRPNRAAGSGYWKATGADKAIGS--PK 103 79****************************.88***************6555689*************************************99..77 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kk Lvfy g+ p+g+kt+W+mheyrl DCAR_016661 104 TVGIKKALVFYAGKPPRGQKTNWIMHEYRL 133 8***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.45E-62 | 5 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.585 | 9 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.9E-28 | 10 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MAGAVDLQLP PGFRFHPTDD ELVMHYLCRK CASQQIDVPI IKELDLYKHD PWDLPGLALY 60 GDKEWYFFSP RERKYPNGSR PNRAAGSGYW KATGADKAIG SPKTVGIKKA LVFYAGKPPR 120 GQKTNWIMHE YRLAQVDRSA KNKNQRGSKL DDWVLCRIYN KKGSLEKHNA NRAAANDMAY 180 LDTSDSVPKL HTDSSCSEQV VSTELREVES QPKLESTTLE YPHNYMPAPA DFMLSAPRQP 240 PQPQSATSTY EMAQWQDVFM YLQRSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-80 | 5 | 167 | 11 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017249552.1 | 0.0 | PREDICTED: NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 1e-115 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A164XP00 | 0.0 | A0A164XP00_DAUCS; Uncharacterized protein | ||||
STRING | XP_009795736.1 | 1e-125 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1239 | 24 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-117 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_016661 |