PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016554
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 354aa    MW: 39466.8 Da    PI: 7.0282
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016554genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
      DCAR_016554 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding46.96.5e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
      DCAR_016554  67 RGSFSDQEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                      899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-23564IPR009057Homeodomain-like
PROSITE profilePS5129425.033965IPR017930Myb domain
SuperFamilySSF466891.42E-2911108IPR009057Homeodomain-like
SMARTSM007172.0E-141363IPR001005SANT/Myb domain
PfamPF002493.7E-161461IPR001005SANT/Myb domain
CDDcd001672.34E-111661No hitNo description
Gene3DG3DSA:1.10.10.602.3E-2465116IPR009057Homeodomain-like
SMARTSM007175.1E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129419.6866116IPR017930Myb domain
PfamPF002493.4E-1467112IPR001005SANT/Myb domain
CDDcd001671.39E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGRPPCSEKK GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGSF SDQEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLSKSE  120
GHGVGHDDNE HDLNGVSSDS SSSGAPKGQW ERALQTDIHM AKAALCEALC LDKSPITTTT  180
LASQAPNFTR ASPVQSSPTY ASSADNIARL LQNWTRKSPN SWSPEITTCH DQYNSNSFNN  240
YHQVGSTSTG SPSSGFGSLY NNFNYSMNNS SSTDVSMDDA ANFTTQSKHD KGKLMLQDYD  300
VTKPIVKNNS SHYDHQQVHE HEELPPLTLL EKWLFDDVTM AAPPQDDLMM NMF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-251411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017250385.10.0PREDICTED: myb-related protein 306-like
SwissprotP813921e-112MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A161YJ660.0A0A161YJ66_DAUCS; Uncharacterized protein
STRINGXP_009594207.11e-122(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.11e-96myb domain protein 30
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]