PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_016468 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | LBD | ||||||||
Protein Properties | Length: 207aa MW: 22458.5 Da PI: 4.5725 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.7 | 7.2e-42 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+l+rkC +dC++apyfpae+ +kf vhk+FGasnv kll+++ +++reda+s+l yeAear+rdPvyG+vg i+ lq q+e+l++el++++ DCAR_016468 14 PCAACKFLKRKCLPDCIFAPYFPAEELQKFISVHKIFGASNVAKLLNEVLPHQREDAASTLSYEAEARLRDPVYGCVGAISILQLQVERLQKELDEAN 111 7*********************************************************************************************9998 PP DUF260 99 ee 100 +e DCAR_016468 112 AE 113 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.182 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.4E-41 | 14 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MAASFSVPRY DYTPCAACKF LKRKCLPDCI FAPYFPAEEL QKFISVHKIF GASNVAKLLN 60 EVLPHQREDA ASTLSYEAEA RLRDPVYGCV GAISILQLQV ERLQKELDEA NAELVSYHCC 120 YHPNMSGTIA TLPAPSAVPI NPVCDYAQIP PQIRPVDLIN TGEAEVCSYY QTPSSVTFPP 180 NDDTNVPDQG GAAGQGLLFN DSASLI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-56 | 14 | 137 | 11 | 131 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-56 | 14 | 137 | 11 | 131 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ148397 | 1e-121 | FJ148397.1 Daucus carota subsp. sativus clone BAC C055M03 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017251651.1 | 1e-151 | PREDICTED: LOB domain-containing protein 25-like | ||||
Refseq | XP_017251652.1 | 1e-151 | PREDICTED: LOB domain-containing protein 25-like | ||||
Swissprot | Q9FML4 | 6e-56 | LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES | ||||
TrEMBL | A0A164XIH7 | 1e-150 | A0A164XIH7_DAUCS; Uncharacterized protein | ||||
STRING | XP_006476856.1 | 2e-62 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.4 | 2e-58 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_016468 |
Publications ? help Back to Top | |||
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