PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_016461 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | LBD | ||||||||
Protein Properties | Length: 198aa MW: 21441.3 Da PI: 6.9688 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.1 | 8e-40 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+l+rkC +dC++ap+fp e+ ++f vhk+FGasnv+kll+++ +++reda+s+l+yeA+ar++dPvyG+v+ i+ lq q+e l++el++++ DCAR_016461 14 PCAACKFLKRKCLPDCIFAPHFPPEELQNFISVHKIFGASNVSKLLNEVLPHQREDAASTLAYEANARLKDPVYGCVRAISILQLQVEGLQKELDEAN 111 7*********************************************************************************************9998 PP DUF260 99 ee 100 +e DCAR_016461 112 AE 113 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.992 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-39 | 14 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MAASFNVVRY NSSPCAACKF LKRKCLPDCI FAPHFPPEEL QNFISVHKIF GASNVSKLLN 60 EVLPHQREDA ASTLAYEANA RLKDPVYGCV RAISILQLQV EGLQKELDEA NAELVNYARG 120 YNHCYHPDIS GTTAAQPAPS AVPVNPMCCY AQIPPQTRPV DLINTGEAGV CNYYRIPSSV 180 TFPRNDTNQG GAAGQGL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-54 | 12 | 120 | 9 | 117 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-54 | 12 | 120 | 9 | 117 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ148397 | 1e-84 | FJ148397.1 Daucus carota subsp. sativus clone BAC C055M03 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017250577.1 | 1e-145 | PREDICTED: LOB domain-containing protein 25-like | ||||
Swissprot | Q9FML4 | 3e-53 | LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES | ||||
TrEMBL | A0A164XIB4 | 1e-144 | A0A164XIB4_DAUCS; Uncharacterized protein | ||||
STRING | POPTR_0015s09370.1 | 2e-57 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.4 | 1e-55 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_016461 |
Publications ? help Back to Top | |||
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