PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016459
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 359aa    MW: 40268.1 Da    PI: 5.2709
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016459genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.2e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l + ++++G g+W+++++  g+ R++k+c++rw +yl
      DCAR_016459 14 KGLWSPEEDEKLFNHIARYGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding431e-1367110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++++E++l++ +++ lG++ W+ Ia+ ++ gRt++++k++w++
      DCAR_016459  67 RGMFSQQEEDLILGLHQVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110
                      788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-25664IPR009057Homeodomain-like
PROSITE profilePS5129424.566965IPR017930Myb domain
SuperFamilySSF466896.36E-2912108IPR009057Homeodomain-like
SMARTSM007175.8E-131363IPR001005SANT/Myb domain
PfamPF002491.1E-141461IPR001005SANT/Myb domain
CDDcd001677.34E-121761No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2465116IPR009057Homeodomain-like
SMARTSM007171.3E-1166114IPR001005SANT/Myb domain
PROSITE profilePS5129418.23766116IPR017930Myb domain
PfamPF002491.1E-1267111IPR001005SANT/Myb domain
CDDcd001677.67E-970109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGRQACCVKQ KLRKGLWSPE EDEKLFNHIA RYGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDLILG LHQVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLLKQG  120
IDPNTHKPLS EAEVVATNEK NHTDGASILQ PPQGHPNVFA PISTDNGNVK YAEASKDPMD  180
RKPNFDPLFL LEFQERVNLS GYSSGLMGQF QKTETIYDHN QFDVKPKFGF SSMPNLTNYD  240
IQGLAETEFS ANTASTMSSL IFNEVKESSG NSSIVNSTAN AALELDKMVE NDRTFSWDAD  300
NSFESMFQFG EIKSEESPNA GHWQGQFQAQ CADDYISYPL MSPSQDLIGE NADIFQQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-281211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017250575.10.0PREDICTED: transcription factor MYB36-like
TrEMBLA0A164XI890.0A0A164XI89_DAUCS; Uncharacterized protein
STRINGEOY208351e-134(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.14e-80myb domain protein 86