PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016451
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 660aa    MW: 75484.3 Da    PI: 6.7811
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016451genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.3e-152268248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       W  eEd ll ++++++G g W++++++ g++R++k+c++rw++yl
      DCAR_016451 22 XEWNSEEDALLRKCIHKYGEGKWHLVPQRAGLNRCRKSCRLRWLNYL 68
                     68*******************************************97 PP
2Myb_DNA-binding40.37.1e-1374117146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++++E +l ++++++lG++ W++I  +++ gRt++++k++w++
      DCAR_016451  74 RGEFSEDEVDLMIRLHRLLGNK-WSLIGGRLP-GRTANDVKNFWNT 117
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.8671668IPR017930Myb domain
SMARTSM007171.1E-132070IPR001005SANT/Myb domain
SuperFamilySSF466891.6E-2421115IPR009057Homeodomain-like
PfamPF002495.0E-142268IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-202375IPR009057Homeodomain-like
CDDcd001672.33E-102368No hitNo description
PROSITE profilePS5129422.07969123IPR017930Myb domain
SMARTSM007173.0E-1273121IPR001005SANT/Myb domain
PfamPF002492.0E-1174117IPR001005SANT/Myb domain
CDDcd001676.68E-876119No hitNo description
Gene3DG3DSA:1.10.10.609.9E-2076123IPR009057Homeodomain-like
PROSITE profilePS513759.076305339IPR002885Pentatricopeptide repeat
PfamPF015351.1308337IPR002885Pentatricopeptide repeat
PfamPF130417.8E-9340388IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.574340370IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.084376410IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.7E-5378404IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.155411441IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0014413433IPR002885Pentatricopeptide repeat
PfamPF015350.011413440IPR002885Pentatricopeptide repeat
PfamPF130412.4E-10446494IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.983447481IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.1E-5449483IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.479482516IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.1E-6484517IPR002885Pentatricopeptide repeat
PfamPF130411.2E-11516563IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.556517551IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.1E-6519552IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.583552586IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0015554587IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.729587621IPR002885Pentatricopeptide repeat
PfamPF130411.2E-10590631IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.6E-9591622IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.125622656IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MQSVVTMSYS KGMKSGNTSS KXEWNSEEDA LLRKCIHKYG EGKWHLVPQR AGLNRCRKSC  60
RLRWLNYLRP TIKRGEFSED EVDLMIRLHR LLGNKWSLIG GRLPGRTAND VKNFWNTNIH  120
KKLATRSNQK EVAIRGEIIQ GKQDSNIAAT SIGATLPLND EGIETLTPDE DGTEWWKNLF  180
AEIDIDDPEQ DSSRGLLMAS SSGSENVDAH RDLMWKTDES SAAAMEFSND FSDIWDLLDS  240
PDHVRLSRTE AAILRVERKA DSRKYTRLWP KAVLEALDDA IKAKRWQSAL KIFDLLRKQH  300
WYEPKGQTYT KLLVMLGKCR QPNQASLLFE IMLSEGLQPT IDVYTALLSA YGFSGLIDKA  360
FQIIEDIKSF SECKLDVHTY SVLINCCFKY RRFDRVEHIL QEMSYLGIQC STVTYNTIID  420
GYGKAQLFEQ MESSLTIMIE SCTCLPDVFT FNSVVGTYGN CGQIEKMEKW FDEFQHMGVN  480
PDIITFNILI QSYGKAGMYE KMSLVMEFME KRFVSPTIVT FNIVINVFRR VKNIDQMEEF  540
FLKMKHQGLK PNSITYCTLI SAYSEAGLMH KVDSIMRQVE NTDVILDTPF FNSAITAYGR  600
AGNVDKMREL FSEMRKRRCL PDNITFSTMI EVYNALNMVE AAQELESKMI SATPRSGIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9f_A6e-522616511450pentatricopeptide repeat protein dPPR-U10
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017249294.10.0PREDICTED: pentatricopeptide repeat-containing protein At3g53170
SwissprotQ9SCP40.0PP279_ARATH; Pentatricopeptide repeat-containing protein At3g53170
TrEMBLA0A164XI200.0A0A164XI20_DAUCS; Uncharacterized protein
STRINGVIT_13s0064g00400.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-52myb domain protein 113
Publications ? help Back to Top
  1. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]