PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016338
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LFY
Protein Properties Length: 367aa    MW: 41958.3 Da    PI: 7.3959
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016338genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY184.58.4e-5751683169
      FLO_LFY   3 peafsaslfkwdpraaaaapp.arlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrl 99 
                  ++++saslfkwd+r+ aa+pp ++ l e    ++p   ++  a  +l++leelf+ yG+ry+t+aki+elGftv+tL++mkd+eld++m+sls+ifr+
  DCAR_016338   5 HDSLSASLFKWDSRNHAANPPpQNRLVEV--LAPP---QMPPAPPALSGLEELFEPYGIRYFTAAKIGELGFTVNTLLNMKDQELDEMMTSLSHIFRW 97 
                  3679********88877665523333333..2333...3456667799************************************************** PP

      FLO_LFY 100 dllvGeryGikaavraerrrleeeeaekkrrkllsedeet.aldalsqeglseepvqeekeaagsggeglg 169
                  dllvGeryGikaavraerrr+ e+ +e +r+  l++++++ alda sqeglseepvq+ +e + s++++ g
  DCAR_016338  98 DLLVGERYGIKAAVRAERRRILEQYHEIHRHPYLHDQNTNhALDAFSQEGLSEEPVQQVHEGTCSKRKQRG 168
                  ***********************998999998887776666*****************9998888776644 PP
2FLO_LFY392.17e-120165355195386
      FLO_LFY 195 rkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakka 292
                  +++ k+    + ++++  e e+e+++ e+  erqrehPfivtepgevargkknGLDYLf+LyeqCr+fL+qvq+iak+ GekcPtkvtnqvfryak+a
  DCAR_016338 165 KQRGKN-IPGRLSSHNACEMESEDEEDENVCERQREHPFIVTEPGEVARGKKNGLDYLFNLYEQCRSFLIQVQNIAKSSGEKCPTKVTNQVFRYAKEA 261
                  222222.2223333444444455555666789****************************************************************** PP

      FLO_LFY 293 gasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerskas 386
                  gasyinkPkmrhYvhCYalhcLdee+snalrra+kergenvG+wrqacykplv+ia+rqgwdid +f++hprLsiWYvPtkLrqLCh+ers+++
  DCAR_016338 262 GASYINKPKMRHYVHCYALHCLDEETSNALRRAYKERGENVGSWRQACYKPLVNIASRQGWDIDLIFSTHPRLSIWYVPTKLRQLCHAERSSRA 355
                  ******************************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016982.6E-1721354IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDPSHDSLSA SLFKWDSRNH AANPPPQNRL VEVLAPPQMP PAPPALSGLE ELFEPYGIRY  60
FTAAKIGELG FTVNTLLNMK DQELDEMMTS LSHIFRWDLL VGERYGIKAA VRAERRRILE  120
QYHEIHRHPY LHDQNTNHAL DAFSQEGLSE EPVQQVHEGT CSKRKQRGKN IPGRLSSHNA  180
CEMESEDEED ENVCERQREH PFIVTEPGEV ARGKKNGLDY LFNLYEQCRS FLIQVQNIAK  240
SSGEKCPTKV TNQVFRYAKE AGASYINKPK MRHYVHCYAL HCLDEETSNA LRRAYKERGE  300
NVGSWRQACY KPLVNIASRQ GWDIDLIFST HPRLSIWYVP TKLRQLCHAE RSSRAAATSS  360
SINYCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1041953534162PROTEIN LEAFY
2vy2_A1e-1041953534162PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251743.10.0PREDICTED: floricaula/leafy homolog
SwissprotO040641e-172FLLH_POPTR; Floricaula/leafy homolog
TrEMBLA0A164XF360.0A0A164XF36_DAUCS; Uncharacterized protein
STRINGPOPTR_0015s11820.11e-171(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66682333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-102floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]