PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016319
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family AP2
Protein Properties Length: 360aa    MW: 40156.2 Da    PI: 8.0274
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016319genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.74.5e-1145101155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +  Aa a++ a++k++g
  DCAR_016319  45 SIYRGVTRHRWTGRYEAHLWDkNCWNEaQSKKGRQGAYDDEAAAAHAYDLAALKYWG 101
                  57*******************99999998888888*****99*************98 PP
2AP250.84.1e-16144195155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV +++ +g+W+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  DCAR_016319 144 SKYRGVARHHHNGKWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 195
                  89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-745101IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-1445111IPR016177DNA-binding domain
SMARTSM003808.6E-1946115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-1246110IPR001471AP2/ERF domain
PROSITE profilePS5103217.70146109IPR001471AP2/ERF domain
PRINTSPR003674.1E-64758IPR001471AP2/ERF domain
PfamPF008471.0E-11144195IPR001471AP2/ERF domain
CDDcd000183.72E-24144205No hitNo description
SuperFamilySSF541717.85E-18144205IPR016177DNA-binding domain
SMARTSM003804.1E-25145209IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-18145204IPR001471AP2/ERF domain
PROSITE profilePS5103218.281145203IPR001471AP2/ERF domain
PRINTSPR003674.1E-6185205IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MTKLSHSSHK NSIASSPIAK GTSTAAKTKR TRKSVPRDSP PQRSSIYRGV TRHRWTGRYE  60
AHLWDKNCWN EAQSKKGRQG AYDDEAAAAH AYDLAALKYW GQETTLNFPL STYEEEVKEM  120
DGQSKEEYIG SLRRKSSGFS RGVSKYRGVA RHHHNGKWEA RIGRVFGNKY LYLGTYATQE  180
EAATAYDMAA IEYRGLNAVT NFDLSRYIKS LKPNRTNDIT DPNNTHQMQK NYNTEIIPVQ  240
YPSQNPGINF LCNQHQEENS SSAETKNVLS QPDHGSTASS ALGLLLQSTK FKEMLERTST  300
VDCPSTPSDS EPPRGSFPDD IQTYFASHDS GAHYGDGEDV IFGDLHSFAS PMFQCGLDA*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251688.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-116AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A164XEN50.0A0A164XEN5_DAUCS; Uncharacterized protein
STRINGcassava4.1_025233m1e-169(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-99ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]