PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_016296

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

C2H2

Protein Properties

Length: 262aa MW: 29256.5 Da PI: 8.334

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_016296	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H DCAR_016296 83 FSCNYCQRKFYSSQALGGHQNAH 105 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.75E-6	80	110	No hit	No description
PROSITE profile	PS50157	11.427	83	110	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	85	105	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MESQREGKQV DGHDDQELKT PNLLLDLSLS SCSQVQDLDP DESVIKHQEP ADHNLNLMIN 60 YLDDENDHTY SPRANNSSEP RVFSCNYCQR KFYSSQALGG HQNAHKRERT IAKRRQRIGF 120 MDSSSSSFMD QNPSMASLPL HGSYNRSLGI KVHSMIHKPS QVTYNFSSNG FGHLVPSLQQ 180 NRTKPTVYRP PVIGRLAQPP ENSYHLVAPP SGGGAARFDS VWKFSPGGDG GRGYNRCESG 240 SLLKKTNHQE DFQKLDLSLK L*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017250253.1	0.0	PREDICTED: zinc finger protein 1-like
TrEMBL	A0A164XE15	0.0	A0A164XE15_DAUCS; Uncharacterized protein
STRING	VIT_09s0002g09080.t01	4e-59	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5827	22	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	6e-34	C2H2 family protein

Link Out ? help Back to Top
Phytozome	DCAR_016296