PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_016199 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 203aa MW: 21938.4 Da PI: 4.6805 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5e-18 | 40 | 89 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y GVr ++ +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a++ ++g DCAR_016199 40 NYIGVRKRS-WGKWVSEIREPRK---KSRIWLGTYNTAEMAARAHDVAALTIKG 89 699***888.**********843...6**********************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.4E-13 | 39 | 89 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.75E-31 | 39 | 97 | No hit | No description |
SuperFamily | SSF54171 | 5.36E-21 | 40 | 98 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.655 | 40 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.3E-31 | 40 | 98 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-34 | 40 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-9 | 41 | 52 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-9 | 63 | 79 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MATEPHTSAF SCPSGSGSGS SLSSDKKRKR QKDCGTQHPN YIGVRKRSWG KWVSEIREPR 60 KKSRIWLGTY NTAEMAARAH DVAALTIKGD SAILNFPQLA ELLPRAESGS PRDVQAAAAK 120 AAAMDSSELS PALSGNESSV NASTNSDELG EIIELPSLEG CFDSGSSMDE LVLVDSDDLW 180 LYTPWWVLEN ELDVQYSQQG MI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-20 | 32 | 98 | 6 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
UniProt | Putative transcriptional activator. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017251373.1 | 1e-148 | PREDICTED: ethylene-responsive transcription factor TINY-like | ||||
Swissprot | Q39127 | 5e-53 | TINY_ARATH; Ethylene-responsive transcription factor TINY | ||||
Swissprot | Q9LYD3 | 7e-53 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A164XBF6 | 1e-146 | A0A164XBF6_DAUCS; Uncharacterized protein | ||||
STRING | XP_006426907.1 | 5e-58 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25810.1 | 1e-51 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_016199 |
Publications ? help Back to Top | |||
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