PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016180
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 396aa    MW: 43337.4 Da    PI: 6.5127
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016180genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.4e-08305345954
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r+RR++i +++  L++l+P        K++ a++L +A +Y+k L
  DCAR_016180 305 ARQRREKISEKIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 345
                  69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.11296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-13302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-13302355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.21E-11302350No hitNo description
Gene3DG3DSA:4.10.280.103.3E-12304354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-5305345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MDYLDWECSP IITNISSSWS NQEHEVAEAF TAESGCAYNG LEKNVDDMIF NPIQQLNRIS  60
YVTEAPVSQS HHLQYYSNPE NILNQVVQHL APPIDSIIVS SNPNYPQSQA EAVSTFSQGR  120
PALCSVKRPH SVMMDNTLSG LMADIGMPYK DGNAFKAIAS TNVASLESLD CLLSATNSNT  180
STSIEDEGVN SIFYPDNSHK NVVTKSIGQT SDGKNSSGFC PKSKKRRILD KPPSSSNISF  240
QQTNNNSLAT ANCVLEEPDS EAIAQMKEMI YRAAAFRPVN FGDEVVAKPK RKNVKISSDP  300
QTVAARQRRE KISEKIRVLQ RLVPGGSKMD TASMLDEAAN YLKFLRSQVK ALENLGQKGD  360
FGNSPNESHA LAPFSMQNST SFSFQNPNPT GHTKI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220226PKSKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251906.10.0PREDICTED: transcription factor bHLH84-like
RefseqXP_017251907.10.0PREDICTED: transcription factor bHLH84-like
RefseqXP_017251908.10.0PREDICTED: transcription factor bHLH84-like
TrEMBLA0A164XAY50.0A0A164XAY5_DAUCS; Uncharacterized protein
STRINGXP_010535200.12e-68(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43502242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.14e-63bHLH family protein