PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016147
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 398aa    MW: 44313.7 Da    PI: 7.5444
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016147genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+lv +++ +G g+W+++++  g+ R++k+c++rw +yl
      DCAR_016147 14 RGLWSPEEDEKLVAYITSYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding50.35.6e-1667109145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg+++++E  l++d+++ lG++ W+ Ia++++ gRt++++k++w+
      DCAR_016147  67 RGSFSPQEAALIIDLHTILGNR-WAQIAKHLP-GRTDNEVKNFWN 109
                      899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-26664IPR009057Homeodomain-like
PROSITE profilePS5129424.926965IPR017930Myb domain
SuperFamilySSF466898.61E-2911108IPR009057Homeodomain-like
SMARTSM007177.3E-131363IPR001005SANT/Myb domain
PfamPF002496.0E-151461IPR001005SANT/Myb domain
CDDcd001672.06E-111761No hitNo description
Gene3DG3DSA:1.10.10.606.7E-2565117IPR009057Homeodomain-like
SMARTSM007179.0E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129419.87666116IPR017930Myb domain
PfamPF002491.6E-1367110IPR001005SANT/Myb domain
CDDcd001671.18E-1069109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MGHHSCCNKQ KVKRGLWSPE EDEKLVAYIT SYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEAALIID LHTILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLISHD  120
ISNKLPPSST SYLNLPNTTF HDNVILNTSL NPNLPEFSFN SNINYPHVLD DNPDPLYLPS  180
TPSSLTLQAG FDHHGDNDAN RDYLHKLERM MIPNYSFDDT NFSLNIPVVP SVPLAQLNYF  240
STSYHDHDYN ANQNQKQKKS HDHDHPSAFG YQPQILDNLD LLDHGHSKHE ATNFMARKMK  300
NVPSSSSTYC HDANALMVPK LCHEEIINMP PLSSTIHSGS STTLAASQME YSNIDTTTVI  360
LSSAASSSSS LKLSPASFVV NLGGLPPNSW PGTPNKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-30141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251793.10.0PREDICTED: transcription factor MYB26-like
TrEMBLA0A161ZXG80.0A0A161ZXG8_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.21e-79myb domain protein 26