PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_016125 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | GRAS | ||||||||
Protein Properties | Length: 556aa MW: 61853.2 Da PI: 6.3446 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 241.9 | 2.7e-74 | 168 | 545 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshlta 98 ++lL cA a+++g+l+++q+lL l+elasp+gd+++Rlaa+ ++AL + l+ +++y++ ++ + ++ + +l + +++ P++++ + +a DCAR_016125 168 EQLLNPCALAITAGNLNRVQHLLYVLHELASPTGDANHRLAAHGLRALTHLLSA--PQTYSISaKSMNFASAEPRFFKDSLIYINDIHPWFTIPNNIA 263 689*************************************************99..8888765344455544455555666669************** PP GRAS 99 NqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg.........skeeleetgerLakfAeelgvpfefnvlva 183 N+ Il+ ++++ + +Hi+D+++s+G+QWp+Ll+ L+ Rp+gpp +R+T++++++ + + L+ +A+ l+v++++++l DCAR_016125 264 NSSILQILSQQqspQNLHIVDIGVSHGVQWPTLLEGLSRRPGGPPsLVRLTVIAPSSDSnqssevpfaVGPPGYSSVPHLTAYAKLLNVNLHISILED 361 *********99888999************************9999678******9776676555555533334445568****************988 PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklp.r 277 ++l++l+ + L p+E+l+++ ++++h++ ++ ++ r+e+L++++sl+Pk ++++e++ +++ n ++F+++f++ +ey + ++ds++a + DCAR_016125 362 HALQSLDAQVLGSTPDETLIICAQFRVHQIS---HNNPDDRTEFLRAMRSLEPKAMILSENDtdCSCiNCGNFATGFARRVEYLWRFLDSTSAAFKgG 456 8*****************************8...66667788******************9944555899*********************7766504 PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +se+r+++E e +++++ g++ +e++e+W er++ aGF+ +++e+++++a+ ll+k++ +++rv+e +g++ l Wk++p+ ++S W+ DCAR_016125 457 DSEQRRMIEGE-----TAKALTNTGEM----NERKEQWCERMQGAGFTREAFREDVVEEARVLLKKYDrHWEMRVDEMNGCAGLWWKGQPVSFCSLWT 545 55777777766.....78889999998....78888********************************9999*************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 36.84 | 141 | 524 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.2E-72 | 168 | 545 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 556 aa Download sequence Send to blast |
MTPEVPEPNP TTDHVLDWVE GSLAYHPSFY PYSFDDNNNA LTDDSWLDVC QDLDQILVSN 60 SFTSDNHYTA PITTASTSTL LVDPIISNHL SVSPPETSKK RKASGEAISD ASQSHKKNQT 120 LRSNEADGDR VVVDQRVSIK RAGNRRGGKH LAASDCKNSE NEDGRWAEQL LNPCALAITA 180 GNLNRVQHLL YVLHELASPT GDANHRLAAH GLRALTHLLS APQTYSISAK SMNFASAEPR 240 FFKDSLIYIN DIHPWFTIPN NIANSSILQI LSQQQSPQNL HIVDIGVSHG VQWPTLLEGL 300 SRRPGGPPSL VRLTVIAPSS DSNQSSEVPF AVGPPGYSSV PHLTAYAKLL NVNLHISILE 360 DHALQSLDAQ VLGSTPDETL IICAQFRVHQ ISHNNPDDRT EFLRAMRSLE PKAMILSEND 420 TDCSCINCGN FATGFARRVE YLWRFLDSTS AAFKGGDSEQ RRMIEGETAK ALTNTGEMNE 480 RKEQWCERMQ GAGFTREAFR EDVVEEARVL LKKYDRHWEM RVDEMNGCAG LWWKGQPVSF 540 CSLWTTDRKQ KRKVR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 4e-31 | 163 | 544 | 83 | 472 | Protein SHORT-ROOT |
5b3h_B | 2e-31 | 163 | 544 | 29 | 418 | Protein SHORT-ROOT |
5b3h_E | 2e-31 | 163 | 544 | 29 | 418 | Protein SHORT-ROOT |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017250505.1 | 0.0 | PREDICTED: nodulation-signaling pathway 1 protein-like | ||||
Swissprot | Q4VYC8 | 0.0 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | A0A161ZZS6 | 0.0 | A0A161ZZS6_DAUCS; Uncharacterized protein | ||||
STRING | XP_009594760.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4949 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 1e-135 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_016125 |
Publications ? help Back to Top | |||
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