PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016007
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 279aa    MW: 30707.5 Da    PI: 7.6645
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016007genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-193181256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 ++ GVr+++ +grWvAeI+d s   +r r +lg+++++eeAa+a+++a+++l+ge
  DCAR_016007 31 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDSPEEAARAYDEAARALRGE 81
                 589******.7*********43...36**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.1E-283190IPR001471AP2/ERF domain
SMARTSM003804.0E-353194IPR001471AP2/ERF domain
PROSITE profilePS5103220.3233188IPR001471AP2/ERF domain
PfamPF008478.8E-153181IPR001471AP2/ERF domain
CDDcd000183.63E-313190No hitNo description
SuperFamilySSF541719.15E-203289IPR016177DNA-binding domain
PRINTSPR003671.0E-63243IPR001471AP2/ERF domain
PRINTSPR003671.0E-65470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MTGYNKANTT TNTITANTIG MEQPTKTTWR RFVGVRQRPS GRWVAEIKDS SQRVRLWLGT  60
YDSPEEAARA YDEAARALRG ENARTNFAKS SSIKSSGCNG GLSESESDSH HGLSFSSLKA  120
KLSKNLQSIM ARTSENKSSK SRVSDHFTFA SIFQFKGTNN NNNYTPYQNT NVIDEKVVQP  180
SIIVPHIDEP WSWESSSSSS FSNEGSNEWL SGLRQHGSDS DGSSDSVGDM NIYDQLGFGW  240
IGSPDSEGSR SKRFKVSSSV MVPPSFSINC EFPHNIEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1331871471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017245298.10.0PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLA0A164ZYR30.0A0A164ZYR3_DAUCS; Uncharacterized protein
STRINGXP_008391659.13e-95(Malus domestica)
STRINGXP_002511793.12e-95(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125641721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-16related to AP2 11