PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_015926

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

GRAS

Protein Properties

Length: 302aa MW: 33390.1 Da PI: 7.7253

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_015926	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	155.4	5.2e-48	129	299	8	180
GRAS 8 cAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103 c + +++d l+ ++L l+ ++ gd+mqR++++fteAL+arl+ +++++++ +p + + +s+e l++++++++++P++k +h+taNqaI DCAR_015926 129 CRSHCKKEDYMLVGRYLHYLNRVVTTLGDSMQRVTSCFTEALNARLNAtlTTKSTSSNSNPFTPFPPDSIEILKIYQILYQACPYIKCAHFTANQAIF 226 66788999999**********************************954455566666666666778************************** PP GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180 ea+e+e+rvH+i + i qG QWpa++qaL++ p+gpp l+iTgvg s+e++ etg+ L+++A++l+v +++++ DCAR_015926 227 EAFESEQRVHVIGLHILQGYQWPAFMQALTAHPGGPPFLQITGVGT----SHEAVMETGRCLSELAHSLRVALRISP 299 ******************************************....9*******************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	27.853	96	301	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-45	129	299	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MVRQKMMNNP LSGSMESLKS QSCCSKLLSN SSNESLLLEA SKKNPLSLDS EKKSLTPSIS 60 SLNFDVLKFD VLDGEMKVQS PDNSALWESF FTDQLDGGDF MISSPVRNLP SPQGTRKWAS 120 TGASTFSLCR SHCKKEDYML VGRYLHYLNR VVTTLGDSMQ RVTSCFTEAL NARLNATLTT 180 KSTSSNSNPF TPFPPDSIEI LKIYQILYQA CPYIKCAHFT ANQAIFEAFE SEQRVHVIGL 240 HILQGYQWPA FMQALTAHPG GPPFLQITGV GTSHEAVMET GRCLSELAHS LRVALRISPC 300 W*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-29	129	299	25	193	Protein SCARECROW
5b3h_D	1e-29	129	299	25	193	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269\|PubMed:23122845}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269\|PubMed:23122845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017245655.1	3e-97	PREDICTED: DELLA protein RGL1-like
Swissprot	G7L166	1e-74	RAM1_MEDTR; GRAS family protein RAM1
TrEMBL	A0A162A640	0.0	A0A162A640_DAUCS; Uncharacterized protein
STRING	VIT_14s0068g01610.t01	2e-84	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	1e-30	GRAS family protein

Link Out ? help Back to Top
Phytozome	DCAR_015926

Publications ? help Back to Top
Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513] Pecrix Y, et al. Whole-genome landscape of Medicago truncatula symbiotic genes. Nat Plants, 2018. 4(12): p. 1017-1025 [PMID:30397259]