PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_015881
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 314aa    MW: 35936.3 Da    PI: 9.1153
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_015881genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3391.4e-121741796
                 E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                 ++p kfa+++   k  ++ + l+ ++g+ W + l   +++g+ +l++GW eF++   L+ g f++Fk++g+s f   v +
  DCAR_015881  1 MIPEKFARKYR--KYLNVRVCLKASKGEIWPIDL--VGYGGELWLQNGWPEFASCYSLRFGHFLIFKYQGNSHF--DVFI 74
                 69********7..448899***************..*********************************99998..4444 PP
2B3521.3e-16220308697
                  ..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   6 tpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  +ps+ ++s +r+v+ k fa +++   +++++++l+  + r W v++  + +++r+ + kGW++F+++n L+ gD++vF+l+++ +  l+v ++
  DCAR_015881 220 VPSNQGASdRRVVIDKAFALRYMRR-TRNFEVSLQV-EERIWAVRC--TVSGKRHRFCKGWSKFAHENSLCGGDVCVFELINEAQMLLKVCIH 308
                  455555553788**********766.6889***877.88*******..99999999************************9865554555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023622.1E-9173IPR003340B3 DNA binding domain
CDDcd100171.31E-10176No hitNo description
SuperFamilySSF1019363.53E-17179IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.733178IPR003340B3 DNA binding domain
SMARTSM010190.032178IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-16278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-16209309IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-18209309IPR015300DNA-binding pseudobarrel domain
CDDcd100179.74E-15214309No hitNo description
PROSITE profilePS5086311.801216311IPR003340B3 DNA binding domain
SMARTSM010193.6E-13216311IPR003340B3 DNA binding domain
PfamPF023622.4E-13219309IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MIPEKFARKY RKYLNVRVCL KASKGEIWPI DLVGYGGELW LQNGWPEFAS CYSLRFGHFL  60
IFKYQGNSHF DVFIYDKSGI EIDYPFVSTL TVRDEQDSFN QARSTQVGKR TMIDINELKA  120
CKKTRANSAC IEPCHIGDCW MRKLQHQKIE KVTSDKDLEV KLDDNAQPLG MIDQTKLELN  180
LYNPMHQDRV TKGASAKDEQ NSTALSKVSE SSKPSFVLTV PSNQGASDRR VVIDKAFALR  240
YMRRTRNFEV SLQVEERIWA VRCTVSGKRH RFCKGWSKFA HENSLCGGDV CVFELINEAQ  300
MLLKVCIHRA AKS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017246556.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A165A1H80.0A0A165A1H8_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-34B3 family protein