PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_015853 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 177aa MW: 19837.1 Da PI: 6.0223 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.7 | 5.9e-18 | 72 | 122 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +g+++AeIr p + k r++lg++ t+e+Aa a+++a+ kl+g DCAR_015853 72 RYIGVRRRP-WGKFAAEIRNPAK--KGSRIWLGTYETPEDAALAYDKAAFKLRG 122 799******.**********844..34*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.21E-29 | 71 | 131 | No hit | No description |
Pfam | PF00847 | 6.8E-13 | 72 | 122 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.0E-33 | 72 | 136 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.499 | 72 | 130 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.1E-31 | 72 | 131 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-22 | 72 | 131 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.0E-12 | 73 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-12 | 112 | 132 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MYSSSMSESD VALLDSIRRH LLEDIDDFDC FAHHTSSCNV PNYGWDDLFI DENVEPIQGV 60 GPECHSAHDW KRYIGVRRRP WGKFAAEIRN PAKKGSRIWL GTYETPEDAA LAYDKAAFKL 120 RGSRAKVNFP DMLGTCISEL IGDSAKRQSP EPADSLSSSS STLSEDFESS KRRRKM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-28 | 71 | 130 | 4 | 63 | ATERF1 |
3gcc_A | 2e-28 | 71 | 130 | 4 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017245362.1 | 1e-129 | PREDICTED: ethylene-responsive transcription factor 13-like | ||||
TrEMBL | A0A165A236 | 1e-128 | A0A165A236_DAUCS; Uncharacterized protein | ||||
STRING | XP_009593488.1 | 5e-43 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 9e-35 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_015853 |