PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_015806
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 450aa    MW: 51311.6 Da    PI: 7.0776
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_015806genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+lv+ + ++G g+W+++++  g+ R++k+c++rw +yl
      DCAR_015806 14 KGLWSPEEDEKLVKHISKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding43.19.6e-1467109145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg ++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w+
      DCAR_015806  67 RGTFSQQEENLIIELHAVLGNK-WSQIAAQLP-GRTDNEIKNLWN 109
                      899*******************.*********.*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-27664IPR009057Homeodomain-like
PROSITE profilePS5129425.673965IPR017930Myb domain
SuperFamilySSF466891.72E-2912108IPR009057Homeodomain-like
SMARTSM007178.0E-141363IPR001005SANT/Myb domain
PfamPF002498.6E-161461IPR001005SANT/Myb domain
CDDcd001676.06E-121761No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2465116IPR009057Homeodomain-like
PROSITE profilePS5129419.32766116IPR017930Myb domain
SMARTSM007174.3E-1266114IPR001005SANT/Myb domain
PfamPF002499.7E-1367109IPR001005SANT/Myb domain
CDDcd001672.81E-869109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLVKHIS KYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQQEENLIIE LHAVLGNKWS QIAAQLPGRT DNEIKNLWNS SIKKKLRQRG  120
IDPNTHKPLS EIENEEKASA SNTKTMDKAS EESYELNFVE AENSNQEMSM EKPKPPQMNA  180
SKQIYSQLID NSFNRISTPP STHEFFLNRF IANHEASTSK PNSDLSTLFS FQQLQNYKQN  240
SDIGLSVDSS TSNFFFNQAS KSSEMISDFN SMTPSIHLSS ISNSYKLPTS LPLDDDMNHD  300
STMRPFHSLR GVQNWDANTL ANSGGSNNES STANTNTVSY FDHNNNGFGW NGAIGKMEKD  360
HHQNHRVNSL EGVENDEMKW NDYLQTPFLL STSMQNHTSQ DMYNETKPET QFLSPPWHHH  420
HQNQQQETST PDVYSKNFQR LSATFGHFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-28121165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017244180.10.0PREDICTED: transcription factor MYB86-like
TrEMBLA0A162A6D80.0A0A162A6D8_DAUCS; Uncharacterized protein
STRINGcassava4.1_007846m1e-143(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-100myb domain protein 61