PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_015704
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 319aa    MW: 35011.8 Da    PI: 8.1351
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_015704genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45.1e-18162216256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  DCAR_015704 162 RKKLRLSKEQSAFLEESFKEHNTLNPKQKHGLAKQLNLRPRQVEVWFQNRRARTK 216
                  788899***********************************************98 PP
2HD-ZIP_I/II127.74.8e-41162252192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rlskeq+++LEesF+e+++L+p++K+ la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een++L+ke +eLr +lk
  DCAR_015704 162 RKKLRLSKEQSAFLEESFKEHNTLNPKQKHGLAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTEENRKLHKELQELR-ALK 252
                  69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-17144219IPR009057Homeodomain-like
SuperFamilySSF466894.71E-18153219IPR009057Homeodomain-like
PROSITE profilePS5007116.649158218IPR001356Homeobox domain
SMARTSM003892.6E-13160222IPR001356Homeobox domain
CDDcd000861.39E-14162219No hitNo description
PfamPF000461.7E-15162216IPR001356Homeobox domain
PROSITE patternPS000270193216IPR017970Homeobox, conserved site
SMARTSM003401.1E-24218261IPR003106Leucine zipper, homeobox-associated
PfamPF021833.5E-10218252IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MELGLSLGDS SSSKTFLDAA QKNSSKPPDL GFHMGLTLHS KSTSDGDDED DYVDIDDRSS  60
QENVKDKSSA LHLLSLAPLR FANQSDNGSS EGGSSGNVRV ARGFDVNRMV AAEEATSSFC  120
MDLAKYRGGN KRSLEDGRND GVEGERGSNS RASDDDENGL ARKKLRLSKE QSAFLEESFK  180
EHNTLNPKQK HGLAKQLNLR PRQVEVWFQN RRARTKLKQT EVDCEYLKKC CETLTEENRK  240
LHKELQELRA LKSSTPFYMQ SPATTLTMCP SCERVATATP PSTTAAKTAG TTSTSTPSPF  300
PLSRSKFFPF SHTPTKAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210218RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017244234.10.0PREDICTED: homeobox-leucine zipper protein HOX11-like isoform X2
SwissprotP466652e-79HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A165A5820.0A0A165A582_DAUCS; Uncharacterized protein
STRINGXP_010265939.11e-106(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.15e-77homeobox from Arabidopsis thaliana