PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_015660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | Nin-like | ||||||||
Protein Properties | Length: 913aa MW: 101812 Da PI: 5.82 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 88.3 | 6.3e-28 | 593 | 643 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e +isl++l++yF++++kdAA ++gvc+T+LKriCRq+GI+RWP+Rkik++ DCAR_015660 593 ERTISLQVLRQYFAGSLKDAAASIGVCPTTLKRICRQHGISRWPSRKIKKV 643 789**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.881 | 577 | 663 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.4E-24 | 595 | 643 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.82E-20 | 804 | 898 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 4.0E-22 | 811 | 894 | No hit | No description |
PROSITE profile | PS51745 | 22.463 | 812 | 897 | IPR000270 | PB1 domain |
SMART | SM00666 | 1.3E-22 | 812 | 897 | IPR000270 | PB1 domain |
CDD | cd06407 | 1.49E-36 | 813 | 896 | No hit | No description |
Pfam | PF00564 | 1.6E-15 | 813 | 896 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 913 aa Download sequence Send to blast |
MDSGAPLTPN NMLATLSDNN MDFDLMDTLF DDGCWLAASP SNFWPQGLSP VASDFSSYYF 60 STTDADNINH LEPNSLQEDF QEEEERLNYS ENVRLVWETS ASLAPESSLV DGNRMNTSLW 120 IPPSEDPNST TSVKNKLFQA FEHLKHHTRD DFLIQIWVPV KKEGQNVLST NNQPFSLDPK 180 SKSLEWYRNV SSNYQFAAQE DSKEYFGLPG RVFLKKLPEW TADVRRLRRE DFPRIDYAQQ 240 CNVRGSIALP VFERGSGACL GVVEIVTTGP DCRPELDDVC KALEDREEVA EIKEILTSVC 300 KRQNLPLAQT WVPCTQQSTE QCRSNGDMAC LSVDASACYY VQDEQVLSFH EACCKKHLLS 360 NEGVVGRALM TNHPCFTTEI SAFNEIEYPL AYHAKMARLH GAVAIRFRSI YTDSISFIIE 420 FFLPIDCKDL EEQKQSVSLL SSQIRQLCHG SHFLPDVEIE TENLSPVREN SPPGGRLVEE 480 IHTKFVSSSS SEEATRDELS WISQMLEAQQ KGNGISVSLG NQKQEPEDFN MNTDWIIPDG 540 RFFSSGAEPS LHKNIVQDKS RGTAKNGVEL SSVKGQRSSG AKKAGEHRKL KAERTISLQV 600 LRQYFAGSLK DAAASIGVCP TTLKRICRQH GISRWPSRKI KKVGHSLKKL QLVIDSVQGS 660 EGAIQLSSFY TNFPELSSQN VTGTSSLSPS KIDNQLKPQP TQHRESLLSP ATTASQSTSS 720 SSPSSSSSYC CSTEAKEAKV NANFSGTGDA PPAVGVLKRA LSDAKLHDSV QEDTKFLVRS 780 HSYKLFSELP PLGSLIPPQK GNNNQALKNG TSFRVKATLG EEKIRFSMPQ YWGFTDLQRE 840 ISRRFNIDIE DVNKLDLRYL DEDSEWILLT CNDDLVECID IHRSSKSHTI KLSLRHSRYP 900 NLGSSLDSCG PS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017247359.1 | 0.0 | PREDICTED: protein NLP2 | ||||
Refseq | XP_017247360.1 | 0.0 | PREDICTED: protein NLP2 | ||||
Refseq | XP_017247361.1 | 0.0 | PREDICTED: protein NLP2 | ||||
Refseq | XP_017247362.1 | 0.0 | PREDICTED: protein NLP2 | ||||
TrEMBL | A0A165A654 | 0.0 | A0A165A654_DAUCS; Uncharacterized protein | ||||
STRING | VIT_03s0038g03710.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1598 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35270.1 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_015660 |