PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_015630 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | GRAS | ||||||||
Protein Properties | Length: 533aa MW: 58842.4 Da PI: 4.5008 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 90.8 | 2.2e-28 | 383 | 496 | 1 | 117 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL++cA+ v+s+d + a++ L+ +++ +s +gd+ qRla f+++L+ar+a+++++ly+al++++ s +e+l+a++++ +++P+ k s + a DCAR_015630 383 LRTLLISCAQSVASEDRRTAHEQLKLIRQYSSASGDASQRLANIFANGLEARMAGTGTQLYAALSSRRIS---ATEKLKAYQAYLKACPFKKTSVFFA 477 6789**************************************************************9999...9************************ PP GRAS 99 NqaIleavegeervHiiDf 117 N++Ile ++++++HiiDf DCAR_015630 478 NKMILEKSSTATTLHIIDF 496 ******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 22.181 | 357 | 532 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.5E-26 | 383 | 496 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol |
Sequence ? help Back to Top |
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Protein Sequence Length: 533 aa Download sequence Send to blast |
MVMDPGSTDF SDVLNGFEFG DEVVLPGFDS PPNYANTFKF KDELVDLSFL DIPDVQPEPD 60 YAGPATNTST STVNNTSPTG SSEMYSPEDN DDGVLKFLNQ ILMEEKIEEK PSMFYDPLAL 120 QAAEQSLYEA LGKQYPPSYG SGDVYQHADS PYDYFTGSSS EYSTSSGGTT AGNYYEPPHW 180 VADSVSLKSS TVQHQPSDYN IDSRSQWSVT SENSLNNNLS GVLDSPMSTQ VIPNIFSDRD 240 SILQFKRGME EASKFLPKIP QLVVNLDNYA LRSDTKEGPP VLQVKVEKDE EIAFSSLRGR 300 KHLLQQDSVV EDERSSKQLA VYEEEVEITE LFDKVLLSGP CCDKEEPIEF SPAFHHENGL 360 AHGSNGGKSR FKKTDSTSEA VDLRTLLISC AQSVASEDRR TAHEQLKLIR QYSSASGDAS 420 QRLANIFANG LEARMAGTGT QLYAALSSRR ISATEKLKAY QAYLKACPFK KTSVFFANKM 480 ILEKSSTATT LHIIDFVLCT DNSIVAKLEI TARLHSCKND LKAQRLEVVN FD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017247291.1 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
TrEMBL | A0A165A6W0 | 0.0 | A0A165A6W0_DAUCS; Uncharacterized protein | ||||
STRING | Solyc06g076280.1.1 | 1e-134 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 5e-87 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_015630 |