PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_015602 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB | ||||||||
Protein Properties | Length: 242aa MW: 27809.1 Da PI: 6.9268 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.1 | 3.1e-16 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +l+ +v+++G ++W+ Ia+ g++Rt+k+c++rw +yl DCAR_015602 9 KGPWTEQEDVQLALCVNLYGDRRWDFIAKVSGLKRTGKSCRLRWVNYL 56 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.4 | 2.5e-16 | 62 | 107 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++y+ DCAR_015602 62 RGKMSSHEERLVLELHSRWGNR-WSRIARKLP-GRTDNEIKNYWRTYM 107 899*******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.742 | 1 | 56 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.32E-28 | 7 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-15 | 8 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-15 | 9 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-19 | 10 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.20E-10 | 11 | 56 | No hit | No description |
PROSITE profile | PS51294 | 24.609 | 57 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 6.5E-15 | 61 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-14 | 62 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.49E-10 | 64 | 107 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.9E-22 | 64 | 110 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MELEGEMRKG PWTEQEDVQL ALCVNLYGDR RWDFIAKVSG LKRTGKSCRL RWVNYLHPGL 60 KRGKMSSHEE RLVLELHSRW GNRWSRIARK LPGRTDNEIK NYWRTYMRKK SQEKKRTKLS 120 SPSSSVSYNS SYSSSSTISS TKIKDTDERN FFDTGGVAAT GLSDAAEIQK GEYSMDEIWN 180 DIVSSDDDEI KPVCPTLVPP IWDYCQDSLW NTDQGKDTDM FLHTSEPFYS LFGPEETFFA 240 G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-28 | 6 | 110 | 1 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 3e-28 | 3 | 110 | 52 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-28 | 3 | 110 | 52 | 158 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017244256.1 | 0.0 | PREDICTED: transcription factor MYB48 | ||||
Swissprot | Q9LX82 | 1e-76 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A165A7F5 | 1e-180 | A0A165A7F5_DAUCS; Uncharacterized protein | ||||
STRING | VIT_06s0004g04140.t01 | 2e-88 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 2e-77 | myb domain protein 48 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_015602 |
Publications ? help Back to Top | |||
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