PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_015554
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ARF
Protein Properties Length: 760aa    MW: 84645.4 Da    PI: 6.3958
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_015554genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.12.9e-22177278199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae++       +  ++ s++l  +d++g +W++++iyr++++r++lt+GW  Fv++++L +gD v+F +    ++ 
  DCAR_015554 177 FCKTLTASDTSTHGGFSVPRRAAEDCfapldytQ--QRPSQELAAKDLHGVEWKFRHIYRGQPRRHLLTTGWTIFVSQKNLVSGDAVLFLR--GANGD 270
                  99****************************9743..344679************************************************4..36777 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++++r+
  DCAR_015554 271 LRLGIRRA 278
                  79999986 PP
2Auxin_resp108.47.8e-36303384182
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                  +a+a+s++s+F+++YnPras++eFvv++++++k++++++ +G Rfk +f+++dsserr+ G+v+g++dld ++WpnSkWr+L
  DCAR_015554 303 VANAISSNSPFHIYYNPRASHAEFVVNYQEYVKSIRSQIPIGVRFKTKFDKDDSSERRFGGVVTGIQDLDIYKWPNSKWRCL 384
                  689******************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.67E-42169290IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-38171290IPR015300DNA-binding pseudobarrel domain
CDDcd100172.79E-20175277No hitNo description
SMARTSM010197.9E-21177279IPR003340B3 DNA binding domain
PfamPF023622.2E-20177278IPR003340B3 DNA binding domain
PROSITE profilePS5086312.802177279IPR003340B3 DNA binding domain
PfamPF065073.0E-30303384IPR010525Auxin response factor
PROSITE profilePS5174517.261653735IPR000270PB1 domain
SuperFamilySSF542772.42E-8658732No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    Send to blast
MEIDLNHVVS EVEEPNACNG ECNKKGDASV VCCLSSSTSS CSSTISSPMA AAAAAAASPM  60
FMELWHACAG PLITLPKKGD LVVYFPQGHL EQAASASPFP HIQVSNFDLN PQIFCKILDV  120
QLLANKENDE VYTQLTLLPV PEPEFPDTNL EEKQHECPGM DDEEGGATPT KSTPHMFCKT  180
LTASDTSTHG GFSVPRRAAE DCFAPLDYTQ QRPSQELAAK DLHGVEWKFR HIYRGQPRRH  240
LLTTGWTIFV SQKNLVSGDA VLFLRGANGD LRLGIRRAAR PRNGLPDSVI GSQNTCRDVL  300
SSVANAISSN SPFHIYYNPR ASHAEFVVNY QEYVKSIRSQ IPIGVRFKTK FDKDDSSERR  360
FGGVVTGIQD LDIYKWPNSK WRCLRVRWDD KDAIGRHDRV SPWEIDLSVS LPPLSIPSSP  420
RLKKLRTSLQ ATPPSNPIPA RVGFLDFEES SRSSKVLQGQ ENVGLVSSHD RGDKLNYPSE  480
FEMQSIMHQR IASHRMSNTG ANNFTRAQPS NTYTGFLESN KFPKVLQGQE ICSLKFLTGK  540
SDVKLSAWGK TIGYDLLDMH QTPKANFYPL ASEGTRNMYF PSNNVNKAAQ DHGMLAYTNF  600
PKEKLPLISS FNQSGYTNHE ATKFNSSNES RSDSVISSFP EVKVNSKYEK DDILNGMVHK  660
QGNLVGRSID LSKLNGYDDL LIEIESLFSM EGLLRDPAKG WRILFTDNEN DMMVVGDDPW  720
NDFCKMVSKI HIYTQAEVEK MMIGMINDDT QSCLEEAPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-119494061353Auxin response factor 1
4ldw_A1e-119494061353Auxin response factor 1
4ldw_B1e-119494061353Auxin response factor 1
4ldy_A1e-119494061353Auxin response factor 1
4ldy_B1e-119494061353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1485720.0FJ148572.1 Daucus carota subsp. sativus clone BAC C234O15 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017247555.10.0PREDICTED: auxin response factor 4-like
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A165A8820.0A0A165A882_DAUCS; Auxin response factor
STRINGVIT_06s0004g03130.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51432234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]