PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_015450
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 293aa    MW: 33274.2 Da    PI: 9.1765
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_015450genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-082367345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT eE +++ +a +++ ++   +W  Ia++++ g+t +++   + 
      DCAR_015450 23 KWTLEENKQFENALALFDKDtpdRWYNIAAMIP-GKTVNDVMKQYK 67
                     8********************************.*******98876 PP
2Myb_DNA-binding47.54.2e-15130175247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+ +++++ k++G+g+W+ I+r + + Rt+ q+ s+ qky
      DCAR_015450 130 LAWTEEEHRQFLRGLKKYGKGDWRNISRNFVTSRTPTQVASHAQKY 175
                      68*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.2341974IPR017884SANT domain
SMARTSM007175.5E-102072IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-42268IPR009057Homeodomain-like
SuperFamilySSF466897.18E-122277IPR009057Homeodomain-like
PfamPF002492.4E-72368IPR001005SANT/Myb domain
CDDcd001672.62E-72369No hitNo description
Gene3DG3DSA:1.10.10.606.7E-13121180IPR009057Homeodomain-like
PROSITE profilePS5129420.346124180IPR017930Myb domain
SuperFamilySSF466892.3E-17126179IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-17127179IPR006447Myb domain, plants
SMARTSM007175.9E-13128178IPR001005SANT/Myb domain
CDDcd001673.94E-11131176No hitNo description
PfamPF002493.1E-12131175IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MNQGLDILSR PNSSWLFESK PTKWTLEENK QFENALALFD KDTPDRWYNI AAMIPGKTVN  60
DVMKQYKELE EDVSVIEAGL IPVPGYASDN SFELEWINNQ GFEGLKQFYV PGGKRSPSDR  120
PCDQERKKGL AWTEEEHRQF LRGLKKYGKG DWRNISRNFV TSRTPTQVAS HAQKYFIRQL  180
SGGKDKRRSS IHDITTVNLA EAKSTSPDNP KPPSANKFIA VEQQHQQDSS NIGMGKALHD  240
WNIQNQGAVM AFEMPNRMKT EAFSGNSTYD TRKSFLQGPQ FGLYNSVSWT QP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1724861173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017244543.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-102DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A165AAB20.0A0A165AAB2_DAUCS; Uncharacterized protein
STRINGEOY072811e-124(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.14e-99MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]