PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | DCAR_015408 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 269aa MW: 29945.9 Da PI: 9.3458 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 81 | 1.4e-25 | 11 | 72 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse.......kAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rl+Wt+eLH+ F +av+qLGG++ AtPk il++m+++gLt++hvkSHLQkYR+ DCAR_015408 11 KERLKWTQELHDLFEKAVNQLGGPDikirfspGATPKGILKAMGIPGLTIYHVKSHLQKYRI 72 68*********************9854444445****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-25 | 10 | 73 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.2E-19 | 11 | 73 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.16E-14 | 11 | 73 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.0E-9 | 13 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.0E-18 | 104 | 146 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 269 aa Download sequence Send to blast |
MGSSRSDVAG KERLKWTQEL HDLFEKAVNQ LGGPDIKIRF SPGATPKGIL KAMGIPGLTI 60 YHVKSHLQKY RISQFVPETP NKSKFERRSI SEILPNFSAT AGAQLNEALQ MQVEVQRRLS 120 DQLEVQKNLR LKIEAQGRFL TKIGEEYKTR PDINAKPSKS FSPVSLPSLC DESESDNKEP 180 AESDSDIEIY DTRTTDTSRG SKRLRVDQKD ASPQRHKKLT PESCGQQGML VPKPPRTQCE 240 PPEFGSPWNA VVYCQAPLMP AASYGSFT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-18 | 10 | 75 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-18 | 10 | 75 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-18 | 10 | 75 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-18 | 10 | 75 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-18 | 10 | 75 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-18 | 10 | 75 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-18 | 10 | 75 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-18 | 10 | 75 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017246600.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like | ||||
TrEMBL | A0A162A8Y8 | 0.0 | A0A162A8Y8_DAUCS; Uncharacterized protein | ||||
STRING | POPTR_0006s10190.1 | 8e-93 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10101 | 20 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G01060.1 | 5e-48 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | DCAR_015408 |