PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_015264
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family AP2
Protein Properties Length: 429aa    MW: 47877 Da    PI: 7.4426
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_015264genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.3e-17152201155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  DCAR_015264 152 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 201
                  78*******************......55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.7E-9152201IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-16152209IPR016177DNA-binding domain
PROSITE profilePS5103217.938153209IPR001471AP2/ERF domain
CDDcd000181.05E-10153208No hitNo description
SMARTSM003801.1E-31153215IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-17153209IPR001471AP2/ERF domain
SMARTSM003800.033245293IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MFDLNVNEAT HELSTDSNCD EVEDHRHHHL FLSSTPRRQD SGTSISSVFN VAEEAPGENI  60
GENTGESCCN FERRELKSVR SVELITRQLF PEKGDEMEKM SDEIESRWLN LSVSGGESRM  120
MRVFEDRKAA VTEEVPVARM KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG  180
GFDTAHAAAR AYDRAAVKFR GPDADINFSA TDYDDDLKQT KDMTKEEFVQ ILRRQSNGLS  240
RGSSKYRGVT LHKNGRWGTQ MDQFLGKQAC NQAAVECNAT AAATNSKPST YGDSADAHHN  300
LDLGLWISPP SNNQRGNDGV RNICLHDPSY HLSGAKRSKV ETLAPAPSGR ETPHYIPSWP  360
VNHSGLAPGH ELTAMKNMEA QVVPSHGISN WEWQRNNLGV VNPLPLLSTA ASSGFSSTTW  420
KFQPPSYR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017244194.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like
TrEMBLA0A165WD510.0A0A165WD51_DAUCS; Uncharacterized protein
STRINGXP_009772737.11e-87(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.14e-64related to AP2.7