PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_015075 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB | ||||||||
Protein Properties | Length: 486aa MW: 54925.9 Da PI: 5.992 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.8 | 1.4e-14 | 240 | 287 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WTteEd +l + + + G +W+tI++ g+ R++k+c++rw +yl DCAR_015075 240 RGPWTTEEDCKLMNFILENGIQCWRTIPKLAGLLRCGKSCRLRWINYL 287 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.4 | 5.3e-16 | 296 | 337 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ E+ ++++++++lG++ W++Ia++++ gRt++++k++w+++ DCAR_015075 296 LSEAEQNKIIELHARLGNR-WSKIASHFP-GRTDNEIKNHWNTH 337 6899***************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07859 | 6.8E-33 | 3 | 146 | IPR013094 | Alpha/beta hydrolase fold-3 |
Gene3D | G3DSA:3.40.50.1820 | 3.7E-46 | 3 | 168 | IPR029058 | Alpha/Beta hydrolase fold |
SuperFamily | SSF53474 | 1.22E-24 | 3 | 166 | IPR029058 | Alpha/Beta hydrolase fold |
Gene3D | G3DSA:1.10.10.60 | 1.8E-20 | 231 | 289 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.672 | 235 | 287 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.76E-27 | 237 | 334 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-10 | 239 | 289 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-12 | 240 | 287 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.59E-8 | 242 | 287 | No hit | No description |
PROSITE profile | PS51294 | 26.045 | 288 | 342 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-24 | 290 | 343 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-14 | 292 | 340 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 294 | 337 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.04E-11 | 297 | 338 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0016787 | Molecular Function | hydrolase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 486 aa Download sequence Send to blast |
MIRCVLLGVS CGANIADYVA RKSVEAGRML DPVKVVAQVL MYPFFIGSVP THSEIRLANS 60 YFYDKPMCIL AWKLFLPEEE FSLDHPAANP LVPDRGPPLK RMPPTLTVVA EHDWMRDRAI 120 AYSEELRKVN VDAPVLEYKD AVHEFATLDM LLKTPQAQAC AEDIAIWAMD CQWLPLVHTP 180 YYIGDEKRNV SDVIMVLMGA ARLPFSGVTV PAESYFVISF SNNRVQMGRQ PCCDKVGLKR 240 GPWTTEEDCK LMNFILENGI QCWRTIPKLA GLLRCGKSCR LRWINYLRPD LKRGMLSEAE 300 QNKIIELHAR LGNRWSKIAS HFPGRTDNEI KNHWNTHIKK RLKASGVYSV AHQQVEPREK 360 AELILGTMPE SILHIPDTEP KTNEIYERQN KIDISSDEST FLLNNYEIMC GSLDVVSLMN 420 QVANTSASYS PSFSVEESSS NPSIGESSYT QGDSAQQWGQ STDAMLSWDA FNQLEEELFY 480 FSKSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-27 | 238 | 342 | 5 | 108 | B-MYB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017245557.1 | 0.0 | PREDICTED: myb-related protein 315-like | ||||
TrEMBL | A0A165WPG5 | 0.0 | A0A165WPG5_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14340.1 | 7e-77 | myb domain protein 40 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_015075 |