PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_015075
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 486aa    MW: 54925.9 Da    PI: 5.992
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_015075genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-14240287148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+WTteEd +l + + + G  +W+tI++  g+ R++k+c++rw +yl
      DCAR_015075 240 RGPWTTEEDCKLMNFILENGIQCWRTIPKLAGLLRCGKSCRLRWINYL 287
                      89******************************99************97 PP

2Myb_DNA-binding50.45.3e-16296337447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++ E+ ++++++++lG++ W++Ia++++ gRt++++k++w+++
      DCAR_015075 296 LSEAEQNKIIELHARLGNR-WSKIASHFP-GRTDNEIKNHWNTH 337
                      6899***************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF078596.8E-333146IPR013094Alpha/beta hydrolase fold-3
Gene3DG3DSA:3.40.50.18203.7E-463168IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF534741.22E-243166IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:1.10.10.601.8E-20231289IPR009057Homeodomain-like
PROSITE profilePS5129414.672235287IPR017930Myb domain
SuperFamilySSF466891.76E-27237334IPR009057Homeodomain-like
SMARTSM007175.2E-10239289IPR001005SANT/Myb domain
PfamPF002495.9E-12240287IPR001005SANT/Myb domain
CDDcd001678.59E-8242287No hitNo description
PROSITE profilePS5129426.045288342IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-24290343IPR009057Homeodomain-like
SMARTSM007171.8E-14292340IPR001005SANT/Myb domain
PfamPF002491.0E-14294337IPR001005SANT/Myb domain
CDDcd001671.04E-11297338No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MIRCVLLGVS CGANIADYVA RKSVEAGRML DPVKVVAQVL MYPFFIGSVP THSEIRLANS  60
YFYDKPMCIL AWKLFLPEEE FSLDHPAANP LVPDRGPPLK RMPPTLTVVA EHDWMRDRAI  120
AYSEELRKVN VDAPVLEYKD AVHEFATLDM LLKTPQAQAC AEDIAIWAMD CQWLPLVHTP  180
YYIGDEKRNV SDVIMVLMGA ARLPFSGVTV PAESYFVISF SNNRVQMGRQ PCCDKVGLKR  240
GPWTTEEDCK LMNFILENGI QCWRTIPKLA GLLRCGKSCR LRWINYLRPD LKRGMLSEAE  300
QNKIIELHAR LGNRWSKIAS HFPGRTDNEI KNHWNTHIKK RLKASGVYSV AHQQVEPREK  360
AELILGTMPE SILHIPDTEP KTNEIYERQN KIDISSDEST FLLNNYEIMC GSLDVVSLMN  420
QVANTSASYS PSFSVEESSS NPSIGESSYT QGDSAQQWGQ STDAMLSWDA FNQLEEELFY  480
FSKSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-272383425108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017245557.10.0PREDICTED: myb-related protein 315-like
TrEMBLA0A165WPG50.0A0A165WPG5_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.17e-77myb domain protein 40