PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_015025
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Trihelix
Protein Properties Length: 438aa    MW: 50190.9 Da    PI: 5.6201
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_015025genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.54.3e-2488191186
     trihelix   1 rWtkqevlaLiearrem..eerlrrgk...............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 
                  +Wt+ +v++Li ++ +m  e+++++g+               +kk++W++vsk+m+ergf +sp+qC++k+++lnkr+k+++++ +k+ ++++++  +
  DCAR_015025  88 KWTDTMVKLLIMVVFYMvdEQAVSEGNdvagkkqgvngsgalQKKGKWKSVSKAMMERGFFVSPQQCEDKFNDLNKRFKRVNDILGKGtSCKVVEDQS 185
                  7**********9877551156666665888889999999999**********************************************66999***** PP

     trihelix  81 yfdqle 86 
                  ++++++
  DCAR_015025 186 LLQRMD 191
                  **9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.4E-2186217No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MEANGTGEGM FSGINSVMLG HQLAPQHHQL HENIVSFGQP QVDQQAKNQQ SSLRQTLHLT  60
ISDDDDDDDE PGLESAGKSH VSPWQRMKWT DTMVKLLIMV VFYMVDEQAV SEGNDVAGKK  120
QGVNGSGALQ KKGKWKSVSK AMMERGFFVS PQQCEDKFND LNKRFKRVND ILGKGTSCKV  180
VEDQSLLQRM DHLSPEIKEE VKKLLNSKHL FFREMCAYHS GCGGSAQHSA EVVGESSQIH  240
RKKKCLHSSE NSPNVPHLGR VETEDSKIIK IGSDEEDDDD DDDEEDDEDD EVEDGAGGHD  300
KESDPRTSHK RRRNEMYSSP SVQEFNDEVN YIVQNETKSS GEKRQWMRIR LMHLEEQRIR  360
YQREAYELEK KKMKWMKFSS RKDRNMEAEK LGNEKMRLEN EKMVLVIKQT EVEHLNFQQQ  420
SIACNRRDDS LQSLDSR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017243631.10.0PREDICTED: uncharacterized protein LOC108215622
TrEMBLA0A165WRX20.0A0A165WRX2_DAUCS; Uncharacterized protein
STRINGcassava4.1_006702m1e-128(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67102231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.14e-86sequence-specific DNA binding transcription factors