PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_015002
Common NameDcMYB4
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 314aa    MW: 35303.7 Da    PI: 6.2778
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_015002genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.6e-181462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd++l+d+++++G+g +W + +++ g++R++k+c++rw++yl
      DCAR_015002 14 RGPWSPEEDQKLKDYIEKHGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding36.41.2e-1169111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ +Ed ++  +++  G++ W+ Ia  ++ gRt++++k++w++
      DCAR_015002  69 GEFSDDEDRIICTLFANIGSR-WSIIAGQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.733966IPR017930Myb domain
SuperFamilySSF466893.02E-2711109IPR009057Homeodomain-like
SMARTSM007174.3E-131364IPR001005SANT/Myb domain
PfamPF002499.6E-171462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-251569IPR009057Homeodomain-like
CDDcd001673.23E-101662No hitNo description
SMARTSM007171.3E-1067115IPR001005SANT/Myb domain
PROSITE profilePS5129416.2967117IPR017930Myb domain
PfamPF002493.9E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2270117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGRAPCCDKA SVKRGPWSPE EDQKLKDYIE KHGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSDDEDRIIC TLFANIGSRW SIIAGQLPGR TDNDIKNYWN TKLKKKLLMS  120
SLMLPNPFVR PPNNINNYQQ YLFSSPSPSS YSSPLPPTLR LCDNNYPTLG ASRSFTSEGF  180
SNISTTLFNI QPQDQVLGSM QNYQEKESPL IMFGGAGDDQ QAASSSSYDE QFMMFSNCGM  240
NSIADEQKQV NLGVSSGDHE IVSNVLDQYN MSCVEEIKQL ISTNNLSCNS NLSFFVDENK  300
TVRSEEEKVL MYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-25141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2985080.0AB298508.1 Daucus carota DcMYB4 mRNA for transcription factor DcMYB4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017245240.10.0PREDICTED: transcription factor RAX2
TrEMBLA0A165WSZ10.0A0A165WSZ1_DAUCS; Uncharacterized protein
STRINGAquca_062_00019.11e-89(Aquilegia coerulea)
STRINGPGSC0003DMT4000050855e-90(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-70myb domain protein 36