PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_014999
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family E2F/DP
Protein Properties Length: 358aa    MW: 39228.8 Da    PI: 7.0286
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_014999genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.71.8e-27103185271
      E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                  ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g
  DCAR_014999 103 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdpgnnlsspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWRG 185
                  689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094044.3E-1311357IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.102.0E-4698190IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.1E-35102185IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.9E-25104185IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.9E-21105186IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144582.09E-41190293IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440745.23E-42191312No hitNo description
SMARTSM011386.5E-69192355IPR014889Transcription factor DP, C-terminal
PfamPF087811.2E-41193327IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MVSGMNNNSK SNGEKNPSRG GATRSWGTTG SAQSVSTSGS VGSPSSRMEA APAAVATTPG  60
SENTFLRLNH LDIHAAGDEA GSQLDVGNKK KKRGQRAVGG DKSGRGLRQF SMKVCEKVES  120
KGRTTYNEVA DELVAEFSDP GNNLSSPDQQ QYDEKNIRRR VYDALNVLMA MDIISKDKKE  180
IQWRGLPRTS LNDIEELKSE RLGLKSKVDK KTAYLKELED QYVGLQNLIQ RNEQLYSSGN  240
APSGGVALPF ILVQTRPHAT VEVEISEDMQ LVHFDFNSTP FELHDDNYVL KAMKFCERPQ  300
GDNVEHDGPG DRGESSSMPN MYQPEISHPS MLSLPMSRTP TSPPLPGIIK ARVKHEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B9e-4096190193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017244641.10.0PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-158DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A165WT200.0A0A165WT20_DAUCS; Uncharacterized protein
STRINGXP_010241817.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-147Transcription factor DP