PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_014984
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ARF
Protein Properties Length: 695aa    MW: 76580.6 Da    PI: 7.4835
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_014984genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99.2e-24117218199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + +++ 
  DCAR_014984 117 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RAENGD 210
                  89****************************996555555..89***********************************************..448899 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  DCAR_014984 211 LCVGIRRA 218
                  9****997 PP
2Auxin_resp115.64.4e-38286369183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  aa+ a+++++FevvY+Prast+eF+vk++ v++a++++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+
  DCAR_014984 286 AATLAAEGQPFEVVYYPRASTPEFCVKASLVKSAMQIRWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPIRWPDSPWRLLQ 369
                  68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-37109221IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-29111222IPR015300DNA-binding pseudobarrel domain
CDDcd100172.65E-21116217No hitNo description
PfamPF023624.2E-22117218IPR003340B3 DNA binding domain
PROSITE profilePS5086313.225117219IPR003340B3 DNA binding domain
SMARTSM010193.5E-22117219IPR003340B3 DNA binding domain
PfamPF065073.7E-33286369IPR010525Auxin response factor
PROSITE profilePS5174518.025608688IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MDSKEKFKDT EKCLDSQFWH ACAGSMVQMP PVNSKVFYFP QGHSEHACQN VDFMNCPRLP  60
PYVACRVSSI RFMADPDTDE VYANIRLVPI SGNEINCDDA GIPGNNGSGE QDKPTSFAKT  120
LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQTILAK DVHGETWKFR HIYRGTPRRH  180
LLTTGWSTFV NQKKLVAGDS IVFLRAENGD LCVGIRRAKR GIGGNPDSTS GWNPAGGNSV  240
VPYGGFSAFL RDDENKLARY GNGGSPPGCG NGTSKAKVKA ESVIEAATLA AEGQPFEVVY  300
YPRASTPEFC VKASLVKSAM QIRWCSGMRF KMPFETEDSS RISWFMGTIS SVQVADPIRW  360
PDSPWRLLQV TWDEPDLLQN VKSVSPWLVE LVSNMPSIHI SPFSPPRKKL RLPQHPDFPL  420
DGQLPVPTFS RNLLGHNSPF ARFPDNTPAG MQGARHTQYG LPLADFHLQK LQSGLFPPGF  480
SPFRHCSIPA RPSINPDINM SSSSENISCL LSIGNSAHNE KKIEDQKPRQ FLLFGQPILT  540
KQQTMLSSSS FTSSGGDIDK VARMSAGDSY ASGSGFALRQ CTIREPSSSE GLLQCKGNLQ  600
EAETSLEIGH CKVFMESEDV GRTLDLSLLS SYEELYRKLA TMFSIKSSDM LKHVLYRDIR  660
GAVKHIGDEQ FSDFVKTARR LTILTDASSN DIEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A9e-771439051388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017243771.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A165WTS80.0A0A165WTS8_DAUCS; Auxin response factor
STRINGEOY078380.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]