PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_014851
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 542aa    MW: 59737.3 Da    PI: 8.403
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_014851genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.7e-1760106148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd+ l++av+ + g++Wk+Ia+ ++  R++ qc +rwqk+l
      DCAR_014851  60 KGGWTPEEDDTLKRAVTIYKGKCWKKIAEFFP-DRSEVQCLHRWQKVL 106
                      688*****************************.************986 PP
2Myb_DNA-binding58.51.5e-18112158148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd ++ ++v+++G+  W++Ia+ ++ gR +kqc++rw+++l
      DCAR_014851 112 KGPWTQEEDVKITELVAKYGPTKWSLIAKSLP-GRIGKQCRERWHNHL 158
                      79******************************.*************97 PP
3Myb_DNA-binding53.94e-17164207146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT eE++ l +a++++G++ W+ Ia+ ++ gRt++ +k++w++
      DCAR_014851 164 KDAWTLEEELALMNAHRLYGNK-WAEIAKVLP-GRTDNAIKNHWNS 207
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.02455106IPR017930Myb domain
SuperFamilySSF466895.31E-1557113IPR009057Homeodomain-like
SMARTSM007173.4E-1559108IPR001005SANT/Myb domain
PfamPF002493.7E-1560106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2162118IPR009057Homeodomain-like
CDDcd001671.33E-1363106No hitNo description
PROSITE profilePS5129430.534107162IPR017930Myb domain
SuperFamilySSF466891.39E-31109205IPR009057Homeodomain-like
SMARTSM007178.3E-18111160IPR001005SANT/Myb domain
PfamPF002491.0E-17112158IPR001005SANT/Myb domain
CDDcd001671.94E-15114158No hitNo description
Gene3DG3DSA:1.10.10.601.1E-26119166IPR009057Homeodomain-like
PROSITE profilePS5129422.787163213IPR017930Myb domain
SMARTSM007172.3E-16163211IPR001005SANT/Myb domain
PfamPF002491.9E-15164207IPR001005SANT/Myb domain
CDDcd001671.61E-12166209No hitNo description
Gene3DG3DSA:1.10.10.604.1E-22167213IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MDELKLEECC LENKQSAAVS SSSVSETSES INIKSPGVCS PTPDSSVAQR RISGPIRRAK  60
GGWTPEEDDT LKRAVTIYKG KCWKKIAEFF PDRSEVQCLH RWQKVLNPDL IKGPWTQEED  120
VKITELVAKY GPTKWSLIAK SLPGRIGKQC RERWHNHLNP YIKKDAWTLE EELALMNAHR  180
LYGNKWAEIA KVLPGRTDNA IKNHWNSSLK KKLEFYLATG NLPPAAKNVL QTSAKDSYLA  240
TSTGKVVCSN NVGSESTMQT SSGTTEVCKI EEDGNQLGLM TSSHDMGVSL GFLHNEPTVS  300
DLAKSKPQSL NIDDNHVYSA SEIESIRTNG VDKAIATSSP CRSPVYGSLY YQSPLLEHYL  360
VSNPNNVLER HLEPEPVASP MSNITPPSMK SSSLYGLTPE SILKMAARSF PNTPSILRKR  420
KAETPKHSPA NESRTADNRA VEGSSLTSDR LGQGTSCLKD AQLHDKMLFE SPASSIPVNN  480
GKSFNASPPY RLRSKRTSIF KSVEKQLDFT PSKEQQDSDA KSKEKPAVNE DCCHTSDIGV  540
T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-68592135159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-68592135159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017243697.10.0PREDICTED: myb-related protein B
SwissprotQ6R0321e-155MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLA0A165WZ370.0A0A165WZ37_DAUCS; Uncharacterized protein
STRINGVIT_08s0007g00360.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54612437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-147myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]