PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_014738
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 975aa    MW: 110635 Da    PI: 5.4047
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_014738genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.51.2e-093844142656
                  -HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  26 saeereeLAkklgLterqVkvWFqNrRakek 56 
                  ++++r eL+ +lg+t +q+k+WFqN+R++ k
  DCAR_014738 384 DEARRLELSVELGMTPSQIKFWFQNKRTQTK 414
                  57899**********************9987 PP
2START118.96.8e-385267434206
                  HHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
        START   4 eeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv...dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                    a++e++++ + + ++W+ s        + + ++ + ++ +   +    ++e ++++gvv+m++ +lve ++d + ++ e ++    ka t++vi+ 
  DCAR_014738 526 HHAMEEFNTLLQ-SNEFWMNSTddgrtviDLQAYERRFSRGP---NspnLRTESSKDCGVVFMNSLDLVEFFMDAN-KYMEVFPtivsKARTIAVIKA 618
                  555666666555.5679***9977664444444444444444...25569**************************.88888888888********** PP

                  T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX. CS
        START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp. 177
                  g      + lqlm+ el +lsplv  R+f f+R+++ql + +w+ivdvS d +++   s+s vR  + pSg+ i+ +++g skvtw+eh+  ++r   
  DCAR_014738 619 GlmgnqnNLLQLMYEELNVLSPLVQtRKFCFLRFCKQLDQNSWAIVDVSYDDPRESFDSQSQVR--RMPSGCYIQAMPDGQSKVTWMEHTRIEDRASi 714
                  ****************************************************999877777777..9*************************998777 PP

                  HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 178 hwllrslvksglaegaktwvatlqrqcek 206
                  h+ +r  + sgla+ga + +a l+r ce+
  DCAR_014738 715 HEFYRGHIWSGLAFGAERRLAVLKRMCER 743
                  ***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.450.1102.9E-1813100No hitNo description
SuperFamilySSF561126.46E-9714337IPR011009Protein kinase-like domain
CDDcd051573.45E-12237333No hitNo description
PfamPF016332.2E-6562261No hitNo description
Gene3DG3DSA:3.90.1200.103.6E-83101338No hitNo description
SMARTSM003898.3E-5357420IPR001356Homeobox domain
PROSITE profilePS5007111.029384416IPR001356Homeobox domain
CDDcd000863.01E-7384417No hitNo description
PfamPF000465.2E-7384414IPR001356Homeobox domain
SuperFamilySSF466893.08E-8384417IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-9384420IPR009057Homeodomain-like
PROSITE patternPS000270391414IPR017970Homeobox, conserved site
PROSITE profilePS5084830.19514746IPR002913START domain
SuperFamilySSF559613.3E-26517744No hitNo description
CDDcd088757.92E-90518742No hitNo description
Gene3DG3DSA:3.30.530.201.5E-6523705IPR023393START-like domain
SMARTSM002342.6E-22523743IPR002913START domain
PfamPF018521.8E-31528743IPR002913START domain
SuperFamilySSF559616.87E-8760949No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 975 aa     Download sequence    Send to blast
MGSVENEKKK DRLPSEATKI LQSLASGWDD IIDPNALQVI RVKGAMTNQV FQIKWPTRTE  60
RSRKVLVRIY GEGVDIFFDR ENEIRTFEFM SKMGRGPRLL GRFSNGRIEE FIHARTLSAA  120
DLRDPETSAL IATKMKEFHN LDMPGPKTVL LWDRLRNYLS VAKRMSSTEE ARDFGLNLIE  180
EELSFLENAL SSDHLTGFCH NDLQYGNIMI DEETSYITII DYEYACYNPI AYDIANHFCE  240
MAADYHTETP HLMDYSKYPG YDERKRFLRV YLSCSGKEPS DSELEHLIQE VEKYTLANHL  300
FWGLWGLISE LVNEIDFNYK EYARQRFQQY WLRKPELLGF STSSPIRANI MEVTGLAKKP  360
AGLPEGEVVD IIDTRLNKFK GSKDEARRLE LSVELGMTPS QIKFWFQNKR TQTKAKQEKE  420
KSIALRALND EIRGEINEIA QVLEALECRF CGKSCQVGEN IFINQQKLRA ENALLKEELE  480
RLSREVEEYT GMPISLHRAT EPSDHVLSNS SGVIATDKAF MVELAHHAME EFNTLLQSNE  540
FWMNSTDDGR TVIDLQAYER RFSRGPNSPN LRTESSKDCG VVFMNSLDLV EFFMDANKYM  600
EVFPTIVSKA RTIAVIKAGL MGNQNNLLQL MYEELNVLSP LVQTRKFCFL RFCKQLDQNS  660
WAIVDVSYDD PRESFDSQSQ VRRMPSGCYI QAMPDGQSKV TWMEHTRIED RASIHEFYRG  720
HIWSGLAFGA ERRLAVLKRM CERINCPLDY STPFFYIGGG RKNLMKLSQR MINGFCSSIN  780
PADGQQDMIS KIDDLEIHTT FRKCTDLVYP DSVVLSAAAT TWFPSAPLSI FNFLIDEKCR  840
PQWDVITDIG WVREAGRIGF HSGNCISLLE AFSTGQNKLI LQESWTDPSG ALVVYCPVPL  900
PAIKAVMSGE DPSILSLSPS GFVISGAMSG GALVTVLLQM SENSATPGSM SLESANLLNT  960
CVGITIDKLK AALS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ig7_A6e-502434463401Choline/ethanolamine kinase
2ig7_B6e-502434463401Choline/ethanolamine kinase
3lq3_A6e-502434463401Choline/ethanolamine kinase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017245631.10.0PREDICTED: homeobox-leucine zipper protein HDG11
TrEMBLA0A162AAD00.0A0A162AAD0_DAUCS; Uncharacterized protein
STRINGXP_008240378.10.0(Prunus mume)
STRINGSolyc03g098200.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.11e-142homeodomain GLABROUS 11