PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_014625

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NAC

Protein Properties

Length: 357aa MW: 41191.3 Da PI: 6.1355

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_014625	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.3	2.1e-55	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +ppGfrFhPtdeelv++yL+kk+++k+++l +vik++d+yk+ePwdL++ + +e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++s DCAR_014625 7 VPPGFRFHPTDEELVDYYLRKKITSKRIDL-DVIKDIDLYKIEPWDLQElcglGI-EEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYS 102 69**************************.9***********95454322.3567********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 k+ lvg++ktLv+ykgrap+g+k+dW+mheyrle DCAR_014625 103 -KHDLVGMRKTLVYYKGRAPNGQKSDWIMHEYRLE 136 .8899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-61	5	156	IPR003441	NAC domain
PROSITE profile	PS51005	59.189	7	156	IPR003441	NAC domain
Pfam	PF02365	1.3E-28	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MDASSHVPPG FRFHPTDEEL VDYYLRKKIT SKRIDLDVIK DIDLYKIEPW DLQELCGLGI 60 EEQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHDLVGMR KTLVYYKGRA 120 PNGQKSDWIM HEYRLETDEN APTQAKGWVV CRVFKKRIAT VRRMSEHESP IWYEDQVSFM 180 PDMDSPKQPN ISYHYPYSCK KEQDFHYQNL SSSDHFLQLP LLETPKILQA PLPILTNCTY 240 MPVHGLNVNL SRNIMQSSSL TQDQFSIPSN SYDQGLEPVT DWRVLDKFVA SQLSHEDVPK 300 QNQDCLNVNS ATLASIISAE DDDSSSLLIR NLNKQDIFDQ EITSTSTSSC QIDLWK*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MDASSHVPPG FRFHPTDEEL VDYYLRKKIT SKRIDLDVIK DIDLYKIEPW DLQELCGLGI  60
EEQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHDLVGMR KTLVYYKGRA  120
PNGQKSDWIM HEYRLETDEN APTQAKGWVV CRVFKKRIAT VRRMSEHESP IWYEDQVSFM  180
PDMDSPKQPN ISYHYPYSCK KEQDFHYQNL SSSDHFLQLP LLETPKILQA PLPILTNCTY  240
MPVHGLNVNL SRNIMQSSSL TQDQFSIPSN SYDQGLEPVT DWRVLDKFVA SQLSHEDVPK  300
QNQDCLNVNS ATLASIISAE DDDSSSLLIR NLNKQDIFDQ EITSTSTSSC QIDLWK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-49	2	157	10	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017246134.1	0.0	PREDICTED: NAC domain-containing protein 7
Swissprot	Q9FWX2	1e-134	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A165XBP1	0.0	A0A165XBP1_DAUCS; Uncharacterized protein
STRING	VIT_16s0022g00690.t01	1e-173	(Vitis vinifera)
STRING	EOY22909	1e-173	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-124	NAC 007

Link Out ? help Back to Top
Phytozome	DCAR_014625

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]