PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_014446
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 364aa    MW: 39023.9 Da    PI: 8.6708
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_014446genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.74e-20160209255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  DCAR_014446 160 KYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 209
                  8********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.1E-33159218IPR001471AP2/ERF domain
PROSITE profilePS5103225.659160217IPR001471AP2/ERF domain
SMARTSM003801.5E-37160223IPR001471AP2/ERF domain
PfamPF008477.6E-14160209IPR001471AP2/ERF domain
CDDcd000187.25E-23160219No hitNo description
SuperFamilySSF541711.57E-22160218IPR016177DNA-binding domain
PRINTSPR003671.2E-11161172IPR001471AP2/ERF domain
PRINTSPR003671.2E-11183199IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MNLPPKEYLA AEGSTMYVDH QFSQSQNSGD HLQYSYRPQQ VTTSGGSGMM WFGGGGDGGG  60
IGSGGVISYG VNSSSPSYSS GSSSSGQKRT RSDQESSVTT QFPGQQLPKL QRGISQDSSS  120
LSSVKEEPDG IAPAAADATP PPAAEIDQSA QPGASYERRK YRGVRQRPWG KWAAEIRDPH  180
KAARVWLGTF ETAEAAARAY DEAALRFRGS RAKLNFPENV RMIPPPLAPP PQPRMANSSS  240
SAFHQPAPFL SQQFEASDTL KDYFEYSRLL QSSGDLQLHQ QPNLLHQMLN VPTAPTQSFG  300
GSFSSQSSVT MLNSPFGQPF PNQQIAGLFQ RPAAGTRGEG SSQDFPATSS RMPGQYFPPS  360
SSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-24159220466ATERF1
3gcc_A7e-24159220466ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017247521.10.0PREDICTED: ethylene-responsive transcription factor ERF115-like
TrEMBLA0A162A9X90.0A0A162A9X9_DAUCS; Uncharacterized protein
STRINGPOPTR_0005s21690.15e-40(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43222140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.19e-30ethylene response factor 110