PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_014406
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 315aa    MW: 35807.1 Da    PI: 9.6919
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_014406genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.6e-174388147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed++l ++v+++G+ +W++Ia++++ gR++k+c++rw++ 
      DCAR_014406 43 RGHWRPAEDDKLRQLVARYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 88
                     899*****************************.***********996 PP
2Myb_DNA-binding591e-1895138146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++T+eE+e+l+ a++ +G++ W+ I+r ++ gRt++ +k++w+ 
      DCAR_014406  95 RKPFTEEEEERLLAAHRIHGNK-WAHISRLFP-GRTDNAVKNHWHV 138
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.6543889IPR017930Myb domain
SuperFamilySSF466892.25E-2940136IPR009057Homeodomain-like
SMARTSM007173.4E-144291IPR001005SANT/Myb domain
PfamPF002493.1E-174388IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-274496IPR009057Homeodomain-like
CDDcd001671.58E-134687No hitNo description
PROSITE profilePS5129426.98190144IPR017930Myb domain
SMARTSM007174.1E-1694142IPR001005SANT/Myb domain
PfamPF002491.3E-1595137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-2197143IPR009057Homeodomain-like
CDDcd001671.88E-7106137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MAIIIDFFLI RLFVADLRYL LSDLHYSQTG GGSSADDAPS CPRGHWRPAE DDKLRQLVAR  60
YGPQNWNSIA EKLQGRSGKS CRLRWFNQLD PRINRKPFTE EEEERLLAAH RIHGNKWAHI  120
SRLFPGRTDN AVKNHWHVIM ARKQREQSKL CGKRSCPDLI SAPDHVHRPN NNSSKICCTN  180
THFLEFQNYK KMDSSTSWNF RPSASKDHAG NADRGGVNYS SSNEFFRGSA SSSTPLLHHP  240
YHLSPSVSRG TLYRDFGSRA ISGYKMLHSK HGDQESMNRA MVSLGNNQQV REDESIIQKE  300
IPFIDFLGVE SLNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-32391433107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017246496.10.0PREDICTED: myb-related protein A-like
TrEMBLA0A162AA170.0A0A162AA17_DAUCS; Uncharacterized protein
STRINGVIT_18s0001g15260.t013e-87(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17842466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.11e-61myb domain protein 52