PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_014309

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

WOX

Protein Properties

Length: 281aa MW: 31415.7 Da PI: 6.1239

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_014309	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.5	4e-22	98	158	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le++Fe+ n +ps+++++e++++l +++e++V++WFqNrRa+ k+ DCAR_014309 98 RQRWTPTPVQLQILERMFEQgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 158 89***************99************************************97 PP
2	Wus_type_Homeobox	101	8.4e-33	98	160	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq DCAR_014309 98 RQRWTPTPVQLQILERMFEQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 160 89***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.337	94	159	IPR001356	Homeobox domain
SMART	SM00389	9.4E-16	96	163	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.41E-19	96	162	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-18	96	163	IPR009057	Homeodomain-like
CDD	cd00086	1.39E-15	98	160	No hit	No description
Pfam	PF00046	6.6E-20	98	158	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MDWENNPEEG KDAHTSNTIT TINNNINTNS NNGGAGMFVK VMTDEQMEVL RKQIAVYATI 60 CQQLVDLHKS LTNQHDLAGV RMGNPYCDPS MGHKITGRQR WTPTPVQLQI LERMFEQGNG 120 TPSKQKIKEI TSELSQHGQI SETNVYNWFQ NRRARSKRKQ QVSAPNNAES EVETEVDSPN 180 HNKTKSEDFQ SQHESAPRSE ELCFQNPEIS SGMHSLDPGS HKVEPPYPSG SSSTPAASMG 240 QMSFYGSMLS NPRMEHLIGK MENPGNYNTF LHPDDYNMTG *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	159	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017243990.1	0.0	PREDICTED: WUSCHEL-related homeobox 8
Swissprot	O81788	2e-84	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A165XN53	0.0	A0A165XN53_DAUCS; Uncharacterized protein
STRING	Solyc02g082670.2.1	1e-132	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5675	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-85	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	DCAR_014309

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]