PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_014234
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 332aa    MW: 36824.3 Da    PI: 6.6752
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_014234genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-20167216255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  DCAR_014234 167 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDRAAYKLRG 216
                  59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.81E-34166226No hitNo description
Gene3DG3DSA:3.30.730.102.8E-32167225IPR001471AP2/ERF domain
SMARTSM003809.6E-39167230IPR001471AP2/ERF domain
PROSITE profilePS5103223.117167224IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-23167225IPR016177DNA-binding domain
PfamPF008472.2E-14168216IPR001471AP2/ERF domain
PRINTSPR003673.0E-11168179IPR001471AP2/ERF domain
PRINTSPR003673.0E-11190206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MMTGVDFDLY NSCTSSPSSY SDPCSEELMK ALEPFMKSAS STDTSSSISS LSPSPTSNFY  60
YPFDSSFSTQ PPTFPVYSPP ESTTQMFSTG FSGFAHMGMD QTGSLGLNQI TPSQILQIQA  120
QIQLQNQQNY YSSISSLPPQ PQRSSNFLGP KPVQMKHTGS PTKPTKLYRG VRQRHWGKWV  180
AEIRLPKNRT RLWLGTFDTA EEAALAYDRA AYKLRGDFAR LNFPHLKLDQ ELSTFKPLHS  240
TVDAKLQAIC QNLNKEPKQK SAKKPKTSKP AFVKVEEASN GSDLSGGSSP ESEISFLDFS  300
EPCFDESENF MLQKFPSVEI DWEALTSSLM S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-23166224160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1882950.0AB188295.1 Daucus carota C-EF7 mRNA for embryonic element binding Factor 7, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017247791.10.0PREDICTED: ethylene-responsive transcription factor RAP2-13
SwissprotO656652e-73ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLA0A165XQ400.0A0A165XQ40_DAUCS; Uncharacterized protein
STRINGPOPTR_0005s07900.11e-103(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.12e-51ERF family protein