PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_014214
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 315aa    MW: 35042.6 Da    PI: 6.5782
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_014214genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.6e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l++ ++ +G g+W++ ++  g++R++k+c++rw +yl
      DCAR_014214 14 KGPWTPEEDQKLAKHIQNHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP

2Myb_DNA-binding53.74.8e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++ +++++  lG++ W++Ia  ++ gRt++++k++w+++l
      DCAR_014214  67 RGKFSEEEEQTILNLHSILGNK-WSAIATNLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-26564IPR009057Homeodomain-like
PROSITE profilePS5129415.908961IPR017930Myb domain
SuperFamilySSF466891.2E-3011108IPR009057Homeodomain-like
SMARTSM007172.7E-141363IPR001005SANT/Myb domain
PfamPF002494.7E-171461IPR001005SANT/Myb domain
CDDcd001672.93E-111661No hitNo description
PROSITE profilePS5129426.70562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-2765117IPR009057Homeodomain-like
SMARTSM007172.0E-1666114IPR001005SANT/Myb domain
PfamPF002495.8E-1667112IPR001005SANT/Myb domain
CDDcd001672.44E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGRSPCCDET GLKKGPWTPE EDQKLAKHIQ NHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SEEEEQTILN LHSILGNKWS AIATNLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHRPRT DIFASLPHLI ALANLKELMD QHSWEEVQAA RLQTEAAQMA KLQYLQLLLQ  180
PPNLNSPSFS NSNNMINHDI ETYNLLASLS SLNKDNHVTL PQANASTDPI LQSCSDNQDM  240
INELQMPFSH MPDLQIPGNL SSPCASTPPL AAPLVTESSI SNTGDACSTS SYGGPTTSYW  300
SELFLEDPLF NSLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-291211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00180DAPTransfer from AT1G34670Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017246222.10.0PREDICTED: transcription factor MYB39-like
SwissprotQ9S9Z21e-105MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A165XQT30.0A0A165XQT3_DAUCS; Uncharacterized protein
STRINGPOPTR_0007s05360.11e-139(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-100myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]