PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_014172
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 313aa    MW: 35486.4 Da    PI: 4.4255
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_014172genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.3e-141564248
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                     g+W++eEd++l++ v    ++   +W++++++ g+ R++k+c++rw +yl
      DCAR_014172 15 GPWSAEEDKKLINFVLNNENKyqcCWRAVPEHAGLLRCGKSCRLRWTNYL 64
                     89********************************99************97 PP
2Myb_DNA-binding51.42.6e-1670114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  ++ E++l++d++ qlG++ W++Ia++m+ gRt++++k+ w+++
      DCAR_014172  70 RGVLSEHEEKLIIDLHSQLGNK-WSKIASHMP-GRTDNEIKNLWHTH 114
                      67789*****************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-18566IPR009057Homeodomain-like
PROSITE profilePS5129410.05964IPR017930Myb domain
SuperFamilySSF466898.2E-2411111IPR009057Homeodomain-like
SMARTSM007171.3E-81366IPR001005SANT/Myb domain
PfamPF002492.0E-131564IPR001005SANT/Myb domain
CDDcd001675.57E-81664No hitNo description
PROSITE profilePS5129424.26965119IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2367119IPR009057Homeodomain-like
SMARTSM007173.7E-1369117IPR001005SANT/Myb domain
PfamPF002491.3E-1370114IPR001005SANT/Myb domain
CDDcd001671.56E-1074115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGRRPCCDKI GLKQGPWSAE EDKKLINFVL NNENKYQCCW RAVPEHAGLL RCGKSCRLRW  60
TNYLRPDLKR GVLSEHEEKL IIDLHSQLGN KWSKIASHMP GRTDNEIKNL WHTHIKKKLG  120
KMGTNPLAHK PRPSDHLPAD SNIHQNHDAQ PSEESREVNE QDKLQENEGM SLLEESIVTN  180
TDDHPLTERI AMETNDAFSI DEVPIVEPGE IFIPDSDLPF SYSSASSTTD ISVSTICSIP  240
DDLDFVPSFE DWLTSDLGQS SGDNMGFLDD DDDFFDWDWL FNVFDIDQID EVFQSSPDLT  300
VPTQSNNQIC SK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-23121195108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017246178.10.0PREDICTED: protein ODORANT1-like
SwissprotQ9C7U75e-77MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A165XSA70.0A0A165XSA7_DAUCS; Uncharacterized protein
STRINGcassava4.1_012707m4e-85(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.15e-79myb domain protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]