PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_014143
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 602aa    MW: 68514.7 Da    PI: 5.6531
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_014143genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.43.6e-33158953128
          NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +++ ewyfFs+rd+ky++g+r+nrat++gyWkatgkd++v s + ++vg+kktLv+y+grap+g +tdWvmheyrl
  DCAR_014143  15 SKDLEWYFFSPRDRKYPNGSRTNRATRAGYWKATGKDRKVNS-QMRAVGMKKTLVYYRGRAPHGARTDWVMHEYRL 89 
                  4567**************************************.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.421114IPR003441NAC domain
SuperFamilySSF1019411.7E-3714114IPR003441NAC domain
PfamPF023652.0E-161489IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MKYACKIAGK SLLPSKDLEW YFFSPRDRKY PNGSRTNRAT RAGYWKATGK DRKVNSQMRA  60
VGMKKTLVYY RGRAPHGART DWVMHEYRLD ERECETASGL QLQDAYALCR IFKKSLNAIK  120
VVNHYGIAAS DHSSSNIEIY SDGRCEDNVE SSDHPMSLSS AYPPNNSMAS ASTYNNSGTN  180
THHDAKWMQY LSEEAFSFSN PSSFQDAAAL SYPPSKVDIA LECARLQHRL SLPPLQVQDF  240
PQADYVDMKM QEARSMYGDT SNQHQDILQE ILSVAQVSQE LMNQNSWING NASAAEDDFS  300
FLPQENKIQG QNNSRSMVTG HNEDLGTERM VENLRWVGMS NKDLVKSFHE EYNCVPIENI  360
SSFQNNHNLQ GESSHQHDFQ EVNDTEETDH FSLEFVNDDP NDHGFLNDAE LDDFSTSPTF  420
DVYEKIEVTH GLFVSTRQVP DTYFHKIVPS QTVKVHINPM IVHSFPISAV DAAARPWNIS  480
LLDKFKALIT TITMVGTTKS LKPWTKTPHP FVGIVSLMIT FLYLEDNIDY LIELRDVDDL  540
PDQMKTEQLR NLENFEIFNW EYKEKKCGNV KKEWGSLVLN KVWPCVTLAL ASYFLGAAHF  600
M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-331212064174NAC domain-containing protein 19
3swm_B2e-331212064174NAC domain-containing protein 19
3swm_C2e-331212064174NAC domain-containing protein 19
3swm_D2e-331212064174NAC domain-containing protein 19
3swp_A2e-331212064174NAC domain-containing protein 19
3swp_B2e-331212064174NAC domain-containing protein 19
3swp_C2e-331212064174NAC domain-containing protein 19
3swp_D2e-331212064174NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017244813.10.0PREDICTED: NAC domain-containing protein 86-like isoform X1
TrEMBLA0A165XT610.0A0A165XT61_DAUCS; Uncharacterized protein
STRINGVIT_04s0079g00280.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14952348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-126NAC domain containing protein 28