PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_014129 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ARF | ||||||||
Protein Properties | Length: 835aa MW: 92755.7 Da PI: 6.1664 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.7 | 2.3e-23 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ + DCAR_014129 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQ 220 99*****************************8544444..48************************************************..889999 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+++++r+ DCAR_014129 221 LLLGIRRA 228 9****997 PP | |||||||
2 | Auxin_resp | 115.6 | 4.4e-38 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv+ ++k+ ka+ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+Wrs+k DCAR_014129 253 AAHAAATNSCFNIFYNPRASPSEFVITLSKYFKAVLhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWPNSHWRSVK 336 79*****************************99986599******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.14E-49 | 111 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-41 | 120 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.54E-21 | 126 | 227 | No hit | No description |
PROSITE profile | PS50863 | 12.337 | 127 | 229 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-23 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-21 | 127 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.3E-33 | 253 | 336 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 2.49E-7 | 700 | 782 | No hit | No description |
Pfam | PF02309 | 6.5E-8 | 705 | 795 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 24.01 | 708 | 792 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 835 aa Download sequence Send to blast |
MKLSTSGLGQ QSHEEEKKCL NSELWHACAG PLVSLPTVGS RVVYFPQGHS EQVAATTNKE 60 IDGHIPNYPN LSAQLICQLH NVTMHADVET DEVYAQMTLQ PLTPQEQKDT YLPVELGIPS 120 RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDVEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRATR PQTVMPSSVL 240 SSDSMHIGLL AAAAHAAATN SCFNIFYNPR ASPSEFVITL SKYFKAVLHT RVSVGMRFRM 300 LFETEESSVR RYMGTITGIG DLDPVRWPNS HWRSVKVGWD ESTAGDRQPR VSLWEIEPLT 360 TFPMYPSLFP LRLKRPWYPG ASSFQDSRDE GVNSMAWLRG EMGEQGLNSL NFQSAGMIPW 420 MQQRVDPTFA RNDLNQQYQA MLAAGLQNSG GGDSLRQPFM QFQQPVQYLQ AVGSHNPLLQ 480 QQSLQQSGPH LHGQSHLLPE SHHRQLQQQS SNRPTEEHHS AYPEAYLIQS ELLQQRQQAN 540 VPSPSYPKSD FSDANSKTSA SISPNMQNML GSLSSEGSGN LMNFTRNGQS MIAEQPAQQS 600 WVSKFASSQV HTSASLSLPP YPGKAAAVEQ ESSSLDAQNQ ALFGSNIDSS GLLLPTTVSS 660 HNTSSIDADI PSIPLGTSGF HNSLYGYMQD SSELLHSAGH VDPPTPSSTF VKVYKSGSVG 720 RSLDITRFNS YNELREELGQ MFAIEGFLED PQRSGWQLVF VDRENDVLLL GDDPWEAFVN 780 NVWYIKILSP EDVQKLGKQE LESFNQNAGE RMNSNGNDDR DLLCGLPSLG SLDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-159 | 16 | 357 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017247344.1 | 0.0 | PREDICTED: auxin response factor 8 isoform X1 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A165XTJ2 | 0.0 | A0A165XTJ2_DAUCS; Auxin response factor | ||||
STRING | XP_009789648.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3857 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_014129 |