PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_014103 | ||||||||
Common Name | C-EF5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 223aa MW: 24686.6 Da PI: 5.289 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.3 | 7.7e-18 | 30 | 80 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++kGVr ++ +g+Wv+eIr p ++++r++lg++ tae Aa+a++aa +l+g DCAR_014103 30 KKFKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALICLKG 80 59*****998.**********9...336************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.57E-18 | 30 | 89 | No hit | No description |
Pfam | PF00847 | 8.1E-11 | 31 | 80 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-19 | 31 | 88 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.2E-34 | 31 | 94 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-29 | 31 | 89 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.298 | 31 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-8 | 32 | 43 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-8 | 54 | 70 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MTRAESDGSG ISAGKKLSAQ TPSSVNKKMK KFKGVRMRSW GSWVSEIRAP NQKTRIWLGS 60 YSTAEAAARA YDAALICLKG PSANLNFPAF SQQHFTPYIN DQITSMSPKA IQRIAAQAAN 120 TFLDNATPLP SPPPLSSASS ASSSPSNNIE DDVSLAFEDH YKPDETVMNV NAPWMFNNDF 180 GSFKFRDMID DMLLFDDQQP SMMINHDHVY EGEEDLRLWD FC* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB188293 | 0.0 | AB188293.1 Daucus carota C-EF5 mRNA for embryonic element binding Factor 5, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017244989.1 | 1e-166 | PREDICTED: ethylene-responsive transcription factor ERF014-like | ||||
TrEMBL | A0A165XU84 | 1e-165 | A0A165XU84_DAUCS; Uncharacterized protein | ||||
STRING | Gorai.010G048900.1 | 4e-45 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6177 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 1e-36 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_014103 |