PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_013839 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 303aa MW: 32853.1 Da PI: 4.6734 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.5 | 1.4e-17 | 35 | 85 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+Wv+eI + r kr +lg+f tae Aa a+++a+ kl+g DCAR_013839 35 CKFRGVRQRT-WGKWVSEISElN-----RgKRTWLGTFATAEAAAMAYDEAAVKLFG 85 79*****999.*******77733.....45************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.3E-12 | 35 | 84 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.57E-15 | 35 | 94 | No hit | No description |
PROSITE profile | PS51032 | 20.969 | 36 | 93 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-20 | 36 | 94 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.2E-34 | 36 | 99 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-28 | 36 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-9 | 37 | 48 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-9 | 59 | 75 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MSKALSLRSA KSVMKVSQSS PRGRRTRGGP DNSSCKFRGV RQRTWGKWVS EISELNRGKR 60 TWLGTFATAE AAAMAYDEAA VKLFGSDAKI NFPERLPQVS CPVQATAPTS EIPEEGIVEL 120 QQGEDPPAMA YDKAAGKLSG GYAKLSENIP QVSCPVHTRA TTSKDTLIYS EGIKTPGGLT 180 EMEQVACPPG PEFSLTTIQY DCLINDLLIG NFDYVMKKQS DVARIVNHVD LQGDKVGKNE 240 GNLGEKLIVE LPKSDGSTLW DEIMATTDLE KIKNPEDFSA GDLDDVFKDI LEDDLGIDIS 300 GF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-16 | 37 | 96 | 3 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017246899.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF034-like isoform X2 | ||||
Refseq | XP_017246900.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF034-like isoform X2 | ||||
TrEMBL | A0A165Y472 | 0.0 | A0A165Y472_DAUCS; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 2e-21 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_013839 |