PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_013826
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 102aa    MW: 11809.1 Da    PI: 9.0655
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_013826genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.6e-081559345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+   e++ +a + +  +   +W+ I+r +  g++++++k ++ 
      DCAR_013826 15 SWTQRQNEQFEHALAIYDRDtpdRWHNISRVVD-GKSAEEVKRHFE 59
                     7*****************99*************.**********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.3151166IPR017884SANT domain
SMARTSM007178.2E-81264IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-51565IPR009057Homeodomain-like
SuperFamilySSF466891.79E-121569IPR009057Homeodomain-like
CDDcd001673.32E-61662No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MASNFISSSR NSASSWTQRQ NEQFEHALAI YDRDTPDRWH NISRVVDGKS AEEVKRHFEL  60
LVKDIMKIES DQVPLPNYRT SGANGRAFEN EQRLFKNIRL Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-346101193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017246328.11e-70PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1734e-34RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A162ABI13e-69A0A162ABI1_DAUCS; Uncharacterized protein
STRINGXP_009611761.13e-44(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.17e-36RAD-like 1