PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_013815
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 995aa    MW: 109142 Da    PI: 5.0724
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_013815genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.84.2e-1690139255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   ++GVr++  +g+WvAeIr+p   g    r +lg+f  a eAa a+++a+ +++g
  DCAR_013815  90 NFRGVRQRT-WGKWVAEIREP---G-GgSRLWLGTFPNAVEAALAYDEAATAMYG 139
                  69****999.**********8...3.24**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-1889148IPR016177DNA-binding domain
CDDcd000184.68E-2989148No hitNo description
Gene3DG3DSA:3.30.730.101.1E-2790148IPR001471AP2/ERF domain
PfamPF008477.4E-1190139IPR001471AP2/ERF domain
SMARTSM003801.2E-3290154IPR001471AP2/ERF domain
PROSITE profilePS5103220.20590147IPR001471AP2/ERF domain
PRINTSPR003671.1E-791102IPR001471AP2/ERF domain
PRINTSPR003671.1E-7113129IPR001471AP2/ERF domain
SuperFamilySSF534483.58E-21398524IPR029044Nucleotide-diphospho-sugar transferases
PfamPF004831.1E-20401525IPR005835Nucleotidyl transferase domain
Gene3DG3DSA:3.90.550.102.2E-16401468IPR029044Nucleotide-diphospho-sugar transferases
PfamPF016992.7E-18613789IPR004837Sodium/calcium exchanger membrane region
TIGRFAMsTIGR003789.1E-90665966IPR004798Calcium/proton exchanger CAX
TIGRFAMsTIGR008463.4E-99665966IPR004713Calcium/proton exchanger
PfamPF016991.7E-21823963IPR004837Sodium/calcium exchanger membrane region
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006816Biological Processcalcium ion transport
GO:0055085Biological Processtransmembrane transport
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0015369Molecular Functioncalcium:proton antiporter activity
GO:0016779Molecular Functionnucleotidyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 995 aa     Download sequence    Send to blast
MADIVQRNSM MGLIKQDSDT GTPRIGDSRK RKSRSTKTKS VAETLAMWRD YNKKLDALNA  60
SAKPIRNFHA KGSKKGCMKG KGGPDNTRSN FRGVRQRTWG KWVAEIREPG GGSRLWLGTF  120
PNAVEAALAY DEAATAMYGA GARLNLPDFS SYKEESGGSA APSMSCADSV LTTTTSNRTG  180
ACIDTDPKVG IADLEMKCSD VEGESKAPAM EMKCSDVEGE SKASETQNYR SPAVVEAMTE  240
VKDERVEIKK EQEDNNDIFN IDKGLLLGEM FDVDELLQSL NTYTLPDQAS NTEWFYNNDH  300
DIGHFLQDDE LIANPSDLSI QQQYPDIKPD DMFNEQTGYN QDLEFLLPGR PEDSNFSPDE  360
LKLLGMDANS GRSMIVSPKA VSDSQNSQTC LDPEASPSVL GIILGGGDGT RLYPLLKKRA  420
KPAVPLGANY RLIDIPVSNC LNSNISKIYV LTQFNSASLN RHLSRAYASS LSSYKNEGLV  480
EVLAAQQSPE NPNWFQNCKI HHSVVGLRSC ISEGAIIEDT LLMGADYYEM GSLQPRNDSL  540
ISTVPTDRKM PALDTAPNRP SDSSIVENFV LRSIMNRIFR SVKIVLFSDK INLLIPFGPL  600
AIVVQNSSNQ QGWVFILSLL GIIPLAERLG WATECLYSLL DFRSIRLLYM LCVLFLSFLA  660
LQGLVGGLLN ATFGNATELI ISMYAMKNGM LRVIQQSLLG SILSNMLLVL GCAFFSGGIV  720
HHNKEQVFNK GTALVNSGLL MMAVMGLLFP AVLHFTHTEL HAGKSELALS RFSSCVMLIA  780
YGAYLYFQLT SQNNMYSPIN EEDGNQDGNL VDEEAPRISR WESIVWLFVL TVWISALSEY  840
LVNAIEGASV SLNMPIAFIS VILLPIVGNA AEHAGAIMFA MKDKLDLSLG VAIGSSTQIA  900
MFGIPFCVVV GWILGYPVDL NFQLFETATL FMSVIVVAFM LQEGTSNYLK GLMLLLCYLI  960
VAASFFVHKD PKSVGEFLQC SIVYRGQIML GLTK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4k1c_A2e-675459745409Vacuolar calcium ion transporter
4k1c_B2e-675459745409Vacuolar calcium ion transporter
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12732SRKRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1882940.0AB188294.1 Daucus carota C-EF6 mRNA for embryonic element binding Factor 6, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A165Y5I50.0A0A165Y5I5_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.11e-25DRE-binding protein 2A