PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_013728
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 361aa    MW: 40505.1 Da    PI: 5.0903
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_013728genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.77.4e-151663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++ Ed +l+  +++ G g+W++ ++  g+ R++k+c++rw +yl
      DCAR_013728 16 RGPWSPAEDMKLAAFIQKNGHGNWRSLPKLAGLLRCGKSCRLRWINYL 63
                     89******************************99************97 PP
2Myb_DNA-binding51.32.7e-1669114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E+e +++++ ++G++ W++Ia++++ gRt++++k+ w+++l
      DCAR_013728  69 RGNFTLQEEETIIKLHDLYGNR-WSKIAAELP-GRTDNEIKNVWNTHL 114
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-21766IPR009057Homeodomain-like
PROSITE profilePS5129414.7691163IPR017930Myb domain
SuperFamilySSF466892.7E-2913110IPR009057Homeodomain-like
SMARTSM007172.9E-111565IPR001005SANT/Myb domain
PfamPF002499.6E-141663IPR001005SANT/Myb domain
CDDcd001671.80E-81863No hitNo description
PROSITE profilePS5129424.98864118IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.6E-2667118IPR009057Homeodomain-like
SMARTSM007175.4E-1568116IPR001005SANT/Myb domain
PfamPF002494.9E-1569114IPR001005SANT/Myb domain
CDDcd001671.51E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGGGRAPCCD KKNVKRGPWS PAEDMKLAAF IQKNGHGNWR SLPKLAGLLR CGKSCRLRWI  60
NYLSPSVKRG NFTLQEEETI IKLHDLYGNR WSKIAAELPG RTDNEIKNVW NTHLKKRLSG  120
KYSQCRSNIS KNKLPKNDEC SSIMIAALSS VSSTSATSNT GAEVPCQEDN KQPTRDHRRD  180
QCPPVATMPE MLTEITPQIC PDNNAKKETS RTSSFSSNAS DYSSSAQPYH QAGNADKEME  240
SLLSYSEEVP SDFDIWTVLE DFEKFESQQE QQLVPSYLQG SSSGDEDYII NHDIELAEKS  300
EWYRYLENNE IGLVGIIGEE ENISQNGKTG NGFCEEMSLE PEIDPDMDCL KHWPPSPHIF  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23161187108B-MYB
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017246113.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLA0A162ACQ30.0A0A162ACQ3_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.15e-68myb domain protein 63