PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_013655
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family G2-like
Protein Properties Length: 292aa    MW: 32142.1 Da    PI: 7.0923
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_013655genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.81.6e-30104157155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  DCAR_013655 104 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 157
                  59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-20101161IPR009057Homeodomain-like
PROSITE profilePS5129411.059101160IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-30103162IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-24105157IPR006447Myb domain, plants
PfamPF002491.1E-7107156IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MREVEECSNW LSNWEQQLPS PDELMPLNQS LITPNLLVAF NLTPNPSPNT NSNAPFFSNP  60
QTLKNPSTPS LQTPSSHPDS ATDFESSELG GGNSGDEPAR TLKRPRLVWT PQLHKRFVDA  120
VAHLGIKNAV PKTIMQLMSV DGLTRENVAS HLQKYRLYLK RMQGGHSGGS GSGLDSATDH  180
LFASSPVPAH FLHPVRPNSD QFLPFVPVVA LQQQQHHHNQ MAVVSGQYRQ MGQFEHPYNV  240
ARQAHQQQQV HMMGTPVHKL VPTSYIEDLE SATATVANGR KALTLFPTGD D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-32104160157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017243804.10.0PREDICTED: transcription factor PCL1-like
SwissprotO222104e-57MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A165YCV50.0A0A165YCV5_DAUCS; Uncharacterized protein
STRINGXP_009790047.11e-105(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24322354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.15e-75G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]