PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_013494
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 417aa    MW: 45746.8 Da    PI: 8.3846
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_013494genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.2e-1785130147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v  +G+ +W++Ia++++ gR++k+c++rw++ 
      DCAR_013494  85 RGHWRPHEDAQLKELVSHYGPQNWNLIAEKLP-GRSGKSCRLRWFNQ 130
                      899*****************************.***********996 PP
2Myb_DNA-binding57.14e-18137180146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++ +eE+e+lv a++ +G++ W++Ia+ ++ gRt++++k++w+ 
      DCAR_013494 137 RKAFNEEEEERLVAAHRIYGNK-WALIAKLFP-GRTDNSVKNHWHV 180
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.33980131IPR017930Myb domain
SMARTSM007177.4E-1584133IPR001005SANT/Myb domain
PfamPF002495.9E-1685130IPR001005SANT/Myb domain
SuperFamilySSF466896.74E-2885182IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-2686138IPR009057Homeodomain-like
CDDcd001671.40E-1388129No hitNo description
PROSITE profilePS5129426.108132186IPR017930Myb domain
SMARTSM007179.2E-16136184IPR001005SANT/Myb domain
PfamPF002493.2E-15137179IPR001005SANT/Myb domain
CDDcd001672.08E-12139179No hitNo description
Gene3DG3DSA:1.10.10.606.0E-20139184IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MVLQNIQSGG GGNKNMCLDL NFEPSPELSL SREEAAYFGR SDSMDVLQEG SFRRVGDGGG  60
VVDGGVQVRG EERRNGAHHV KLCARGHWRP HEDAQLKELV SHYGPQNWNL IAEKLPGRSG  120
KSCRLRWFNQ LDPRINRKAF NEEEEERLVA AHRIYGNKWA LIAKLFPGRT DNSVKNHWHV  180
IMARLQRDQN SIHRRRNNNA SSSTTTIVPA QTFSLGGGIT TAPIPANQYD QEMVNIGTVN  240
ACSGTTFVST NKNIITACSN DSATISTNTI SASTGDESAA STCTNLSLNH EFPVSVSRFS  300
APNHFLSRFS PRILAPHQPF SWSHLGLHSL SAAENVENDA NKKVLIGAEE FKTNSNDSNS  360
DVVSASVLVS VSTATDSIGN YRRIQNNLSY KDAKMYEQEK KAPRFIDFLG VGSTSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31851847106B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017246497.10.0PREDICTED: myb-like protein Q
TrEMBLA0A165YJM20.0A0A165YJM2_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-65myb domain protein 105